Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccatctgaacatgcatccactttctaatcaacgcaattttttactaccatttctccccttgcatctctaaggcattcaccagatgatgtgctgctgatgtcagtttatgcttggcagGGAATCAGTTCTTGAACATTTTGTTCATAAGGTGCGGTGTCGAGGAATGTTTTCTACTCACTATCACCGATTAGCAGTAGACTACAAAAAAAATTCCAAG

Basic information

species Vitis vinifera
transcript Vv07s0005g01370.t01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA19G40350.1 (Glycine max), 3'ss of exon 18
gtaagtgccatctga------acatgcatccactttctaatcaacgcaattttttactacc-atttctccccttgcatctc-taaggcattcaccagatgatgtgctgctgatgtcagtttatgcttggcagGGAATCAGTTCTTGAACATTTTGTTCATAAGGTGCGGTGTCGAGGAATGTTTTCTACTCACTATCACCGATTAGCAGTAGACTACAAAAAAAATTCCAAG
||||||| |   ||       |  || ||   ||||   | |       ||   || |    |||  |    | || |||  | || |  || || |||  ||   | || || |||    ||  ||| ||||||||||||  | |||||| |||| |  ||||||| |||||| ||| |||||||||| |||||||| |||||||| || || ||    ||| || | |||
gtaagtgtctattgggggattagttggatatgcttttgtaccttatggtttcagtattcttgattaattttatagcttctggtgagtccatctcctgattctgccttccttatttcaa---atatttgacagGGAATCAGTATTAGAACATCTTGTGCGGAAGGTGCAGTGTCGCGGATTGTTTTCTACCCACTATCATCGATTAGCTGTTGATTATCTCAAAGATCCGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctaaggcattcaccagatgatgtgctgctgatgtcagtttatgcttggcagGGAATCAGTTCTTGAACATTTTGTTCATAAGGTGCGGTGTCGAGGAATGTTTTCTACTCACTATCACCGATTAGCAGTAGACTACAAAAAAAATTCCAAG
                             tgctgat  putative branch site (score: 3)
                                       agtttat  TA-rich tract