Sequence
atgc intronic sequence ATGC exonic sequence...agattagtcgtctattgatcaaaattatgtcttaacaaactatctttatttagggatacaattgtactggctatttaagtgacaagattgttttatgcagATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM2G010342_T01 (Zea mays), 3'ss of exon 17
----agattagtcgtc-tattgatcaaaattatgtcttaacaaactatctttatttagggatacaattgtactggctatttaagtgacaagattgttttatgcagATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGG
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taggagttaaaacattacagtgctcaca-tgatatttctgaaagcaaaatattttttaaggtat--ctgcgccta--atgtggattactacttgacaccttgcagATGGTTAAGATGTTGGACATCCTTGCAGAATATCTCTCCCTTCGGGGATTTCAGTTTCAGAGGCTTGATGGTAGTACAAGAGCAGATCTTCGTCATCAAG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 18
--agattagtcgtctattgatcaaaattatgtcttaacaaact--atctttatttagggatacaattgtactggctatttaagtgacaagattgttttatgcagATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGG
|| | || | | | || | | || ||| | | | |||| |||| | || | || || | | | ||| || |||||||||||||| ||||| |||||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| |||||||| |||||| | || || || |
cttacctaaacatcc-tagcctgctttaatttttgaaaaaaatgaaatatgctttaaggattaatttatgatga-tactaacttaacagaggcgta--atgcagATGGTTAGGATGTTAGATATACTGGGAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTTCGACAACAAG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA14G03780.1 (Glycine max), 3'ss of exon 18
--agattagtcgtctattgatcaaaattatgtctt--aacaaactatctttatttagggatacaattgtactggctatttaagtgacaagattgttttatgcagATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGG
| | | || | || ||| | || |||||| | | | || | | | |||| | ||| | | ||| || | |||||||||||||| ||||| |||||||||| ||| |||||||| ||| ||||||| ||||||||| |||||||||| |||||||| |||||| | || || || |
cttgtccaagcatcc--tagtctgctttaatttttgaaacaaaagaaatatgctttaagg-attagtgtaggatgattctaacttaacagag-gtgtaatgcagATGGTTAGGATGTTAGATATACTGGGAGAGTATATGTCCCTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTTCGACAACAAG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 19
agattagtcgtct-attgatcaaaattatgtcttaacaaactatctttatttagggatacaattgtactggct-atttaagtgacaagattgttttatgcagATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGG
| || ||| ||||| || | | | |||| | | || | | || | | | | || || || || || | |||||||| |||||||| ||||| ||||||||||| |||| |||||||| ||||| || ||| | || ||||||||||| ||||| || |||||||||| |
-agtctttcatcttgttgataggccttcttgcattgttaactcttacaaaatatgtcttgaactttcttaatttatcgttgttgcactgtttgctt-tacagATGGTAAGAATGTTAGATATCCTGGCAGAATACCTGTCTCTTAGAGGTTTCCAGTTCCAGAGACTGGATGGTAGTACTAAGGCAGAACTGCGTCAGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatttagggatacaattgtactggctatttaagtgacaagattgttttatgcagATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGG
ttgtttt CT-rich tract
attgttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agattagtcgtctattgatcaaaattatgtcttaacaaactatctttatttagggatacaattgtactggctatttaagtgacaagattgttttatgcagATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGG
- - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - -aacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaga