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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA

Basic information

species Vitis vinifera
transcript Vv06s0004g06920.t01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: LOC_Os05g07130.2 (Oryza sativa), 3'ss of exon 18
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagt-ata-gaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
         |||   ||||  ||||| | ||  |  ||| | ||      |||   || | | | | ||| |    ||   ||||  || |  |||  | |||||||||||||||| ||||||||||||||  |||| ||||||||||| ||||| |||||||||||||||||    ||||| |||||||  ||
-------gtaatcaggaaagttttggagtatttcttacataact-----cttgcaaggtagttatttatatgggcgttgcttaacaattgttgttt--gcagATACAATGGCGTGCTCTTGATGAGATAAACTCTGGGGTGTGTGATGGGATGACGTATGAAGAGATAAAGAAAGTTATGCCCGAGGAATTTGA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 3'ss of exon 17
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttg--tgtggaaatgagtatagaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
   |  ||   | ||| ||| |         ||  || |||  |  |  |     | | |  || |     || | |   ||   ||   |   |    |||||||||||||||||||||||||| ||||| |||||  | |||||||| ||||| ||||| || |||||||| |  |  ||||| ||||| ||
-gtcagtttgctctaggaaattaccaaactcaagtaagaaaattttgtctcaacttttagctatcaaacctgacactggcatgttttccatgtgtcctctagATACAATGGCGTGCACTTGATGAAATAAACGCTGGCATCTGTGATGGGATGACGTATGATGAAATAAAGAAAATTAAACCTGAAGAATATGA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: LOC_Os03g18310.3 (Oryza sativa), 3'ss of exon 16
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatt--tgtgtggaaatgagtatagaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA--------
   |  ||   | ||| ||| |         ||  || |||  |  |  |     | | |  || |     || | |   ||   ||   |   |    |||||||||||||||||||||||||| ||||| |||||  | |||||||| ||||| ||||| || |||||||| |  |  ||||| ||||| ||        
-gtcagtttgctctaggaaattaccaaactcaagtaagaaaattttgtctcaacttttagctatcaaacctgacactggcatgttttccatgtgtcctctagATACAATGGCGTGCACTTGATGAAATAAACGCTGGCATCTGTGATGGGATGACGTATGATGAAATAAAGAAAATTAAACCTGAAGAATATGAGTACGCAA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM2G021846_T01 (Zea mays), 3'ss of exon 18
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatag-aaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
        | |||| |     ||    |  | |  |       ||   |  |||    |  | |||| || || |||     |||| | |  |||  |||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||| | |||||| |||||||  ||
--------gtatttgg-----ttacacgatttaggagtcttcttaaagaactgttgctatgtaagtacagcaagattgctcgacttgtgttattt--gtagATACAATGGCGTGCTCTTGATGAGATCAATTCTGGAGTGTGTGATGGGATGACTTATGAAGAGATAAAGAAAATCATGCCCGAGGAATTTGA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM5G824405_T02 (Zea mays), 3'ss of exon 16
--tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
  ||||| |   |  |   |||||     ||   | ||| |   ||    | || |       | |  | |   || | | |  ||  |    || |  ||||||||||||||||| ||||||||||| |||||||| || |||||||| |||||||| || || |||||||| |  |  ||||| ||||| ||
gttagctatcataggtgataaaata----ggcctagcaagactgctctctacttatagaagtgttaccaaaactaact-tgtttctcctcatgttcttctagATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA02G39390.1 (Glycine max), 3'ss of exon 18
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattctataact--tttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
                   | | |  |   |||   |  ||    ||| |   |   | |     |||      | ||  |  |  | | ||  | || |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||| || |||||||||||||| ||||| || ||
----------------gttagtgtcatccttaattcaggaaatatggattgactaaagtatacgttattagtgctcctgcacttactatctatatatgttagATACAATGGCGCGCACTTGATGAGATAAATGCTGGTGTGTGTGATGGGATGACGTATGAAGAAATCAAGAAGAACATGCCAGAGGAGTATGA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 29
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaatt-------ctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
                      || |||    | |   || ||  | ||| ||  | || |  |||||| |  |||       ||  |  |  | |   | || |||||||||||||| |||||||||||||||||||| || ||||||||||| | |||||||||||| || |||||||||||||| ||||| |||||
---------------------gttagtg--ccatccttaagtcaggaaatatggattgacaaaagtatacattattagtgctcctgcacttactatctatatgttagATACAATGGCGCGCACTTGATGAGATAAATGCCGGTGTGTGTGATGGGAAGACATATGAAGAAATCAAGAAGAACATGCCAGAGGAGTACGA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA11G27870.1 (Glycine max), 3'ss of exon 19
--tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattctataacttt-tttacttt-----tggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
  |||  |   |||| ||   |   | ||| | |  ||    || ||    |||     |||||  ||  | |||  |  | |  ||   ||||| |     || ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| | ||| || ||||| |||||||| ||||| || ||
gttagtgtcataattaagtttatggttgtgtacattcatgctattta----tttcacaagaaataggttgacaaatgtacacattttgacttactatctatatgttagATACAATGGCGTGCACTTGATGAGATAAATGCAGGGGTGTGTGATGGTATGACATACGCAGAAATCAAGAAAAACATGCCAGAGGAGTATGA

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA18G06770.1 (Glycine max), 3'ss of exon 20
-tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattcta---taacttttt---tacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA-
 |||  |   | || |    ||  | |||   |  ||    || ||    |||     |||||  ||  | ||| ||  |   | ||||  |   ||  | ||  ||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||| ||| || ||||| |||||||| ||||| || || 
ttagtgtcatacttgaatttaaagttgtgtgcagtcatgttattta----tttcacaagaaataggttgacaaatttacacgttgacttactatctatatatgtcagaTACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGGTATGACATATGCAGAAATCAAGAAAAACATGCCAGAGGAGTATGAG

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA11G27410.1 (Glycine max), 3'ss of exon 24
--tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattctataacttt-tttactttt-----ggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
  |||  |   | || ||   |   | ||| | |  ||    || ||    |||     |||||  ||  | |||  |  | |  ||   ||||| |      | |||||||||||||||||||||||||||||||| || || ||||||||||                                              
gttagtgtcatacttaagtttatggttgtgtacagtcatgctattta----tttcacgagaaataggttgacaaatgtacacattttgacttactatctataagttagATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATG----------------------------------------------

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 3'ss of exon 18
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
     || |  ||||   |   |    | ||  |     | ||| |   | | |    |  |   |      || || ||  ||  | |  |  |  ||| | ||||||||||| || || ||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||| || ||||||||
----gttggtgtttacctactgtc--cgaatgtcttctgactcttgaggtgtata-atattttgttgcgaggaaatcgatttctcatattttcatcttagGTGCAATGGCGTGCCCTGGACGAGATCAATGCTGGAGTTTGTGATGGGATGACATATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322291|gb|CD005553.1|CD005553
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGT
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGT
EST: gi|352764397|gb|FQ472754.1|FQ472754
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71882349|gb|DT031404.1|DT031404
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|352769630|gb|FQ468558.1|FQ468558
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71888454|gb|DT037509.1|DT037509
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|352768928|gb|FQ468119.1|FQ468119
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71889378|gb|DT038433.1|DT038433
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71887336|gb|DT036391.1|DT036391
EST:     TTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: TTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71890359|gb|DT039414.1|DT039414
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|30321972|gb|CD005234.1|CD005234
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGAT
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGAT
EST: gi|27580319|gb|CB003014.1|CB003014
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAA-TGCTGGAGTGTGTGATGGAA
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAA
EST: gi|27581545|gb|CB004240.1|CB004240
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|34362375|gb|CF403960.1|CF403960
EST:     GTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: GTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|32250239|gb|CD716058.1|CD716058
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|110360631|gb|EC923892.1|EC923892
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|352781433|gb|FQ468277.1|FQ468277
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71888451|gb|DT037506.1|DT037506
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71881182|gb|DT030237.1|DT030237
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|71885715|gb|DT034770.1|DT034770
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|27582400|gb|CB005095.1|CB005095
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|352768854|gb|FQ468045.1|FQ468045
EST:     CTCTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
EST: gi|30321402|gb|CD004664.1|CD004664
EST:     CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAG                         ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG
genomic: CACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtga ... cttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatttgtgtggaaatgagtatagaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA
                               ctataac  putative branch site (score: 3)
                                     cttttttactttt  CT-rich tract
                    tatagaaaattctata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagcttttgaatttagaaaaatttggtggataaccaacaaatctaggaatttgtgtggaaatgagtatagaaaattctataacttttttacttttggtagATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - agaaaaa
- - - - - - - - - - - -tggtgga
- - - - - - - - - - - - - - - - -ccaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaat