1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaaaccttatagtgatttacgttttcataagttgttggattcatttcccctctctgctcttcaagtaatgcaattcatctcagattagtaacttttttagaggcaaatccagtctaccatcttccccatcagtctgtctggatgtacagatgttgtgctgtgctgatggtttttgctttctgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAAATCTAGAGATCCGGCATCGCAAGTGCCCAGCTTGTGGAACTGCATTTG
species | Vitis vinifera |
transcript | Vv06s0004g00950.t01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAG GTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAEST: gi|32249956|gb|CD715775.1|CD715775
genomic: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAGgtaaacctta ... tgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGA
EST: ATGGCAAGGCAATTCTGANATGCGGTGTGTGTTTTGACCGGCCAAAGGAG GTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAEST: gi|110370378|gb|EC929549.1|EC929549
genomic: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAGgtaaacctta ... tgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGA
EST: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAG GTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAEST: gi|27579894|gb|CB002589.1|CB002589
genomic: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAGgtaaacctta ... tgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGA
EST: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAG GTCGTAATCGTGAAGTGCTATCATCTGTTCTGNCA-TCCATGCATCCAAAGEST: gi|27581325|gb|CB004020.1|CB004020
genomic: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAGgtaaacctta ... tgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTG-CAATCCATGCATCCAAAG
EST: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAG GTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAA
genomic: ATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAGgtaaacctta ... tgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAA
gtctggatgtacagatgttgtgctgtgctgatggtttttgctttctgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAAATCTAGAGATCCGGCATCGCAAGTGCCCAGCTTGTGGAACTGCATTTG
tgctgat putative branch site (score: 3)
tttttgctttctgtt putative PPT
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccttatagtgatttacgttttcataagttgttggattcatttcccctctctgctcttcaagtaatgcaattcatctcagattagtaacttttttagaggcaaatccagtctaccatcttccccatcagtctgtctggatgtacagatgttgtgctgtgctgatggtttttgctttctgttgggcagGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAAATCTAGAGATCCGGCATCGCAAGTGCCCAGCTTGTGGAACTGCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC