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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 3'ss of exon 18
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaa---aagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                          || | || | |     |||||       || || ||  ||  || |   |      | |    |    || |||  |||  ||| |   || ||  | |     ||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||| |||| ||||||||| ||
------------------------------------------------------------------------------------------attttttaggctatctatttta------atttattcccctggaactctgtttcgtctgattacttttcttattaaattttaattgatgcaattttcttttctcaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTTATTGCGCAGTGCTTTATA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: LOC_Os12g04990.3 (Oryza sativa), 3'ss of exon 17
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                 | |   |   ||  ||   ||  ||    |||  ||||| | ||    | |     | || |  || |  |    |||  ||   | ||| ||||  ||  | |      ||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||| |||| |||| |||| ||
-----------------------------------------------------------------------------cacattttcttaggtaatttaagcccctggaactgtatttgatctgattagtttt-----cttattaaataaatt----attaattgattgtgttttaatggtc-tca------agGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTTATTGCGCAGTCCTTTATA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM2G059381_T03 (Zea mays), 3'ss of exon 5
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                             | ||||||     | ||   | ||  | ||||  | | |  |    |   |  |||| | |   | |  |   || || ||  |  ||  |   |   ||||| ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||  |||| || |||||| ||
--------------------------------------------------------------------------------------------gtgttggtctgactagttacatttttgtgtaattaattgtgttggtctgactagttacatttttgtgtaattaatt-gtttttcacttttctgggttgaagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTCATTGCTCAATGCTTTATA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM2G176546_T01 (Zea mays), 3'ss of exon 9
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagt-tgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                       |  |   | |  ||   || ||| |   |||  ||     |||  |   |       | | |   |  |  |||||   | |  ||   |||    |    | | |  |  ||     |  | ||   | | | | | |||    ||  |||||  | |  |  ||   ||||| ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||| ||  ||||||| || ||| ||
-----------------------gtaaaaacgtgcactgttttatattttatccattcagaacttgtgttctt------gcagaacactttt-ccttggctatattgttgatttacattttccctaggcgctgtttgatctcaccgtt-tttcttcctatattattaatgccttaaatttctcctggattttagGAAAAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAAAATGTCTATGCCAAATGCAAGTTCATTGCCCAATGTTTTATA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 18
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgac--agGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                                ||   |    | | |  | |  |  |  ||  |    | |   ||   ||||  |||    | ||     | |  || |||  ||   || |     ||||||||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||| || |||||||||||||| || ||||||||||||
---------------------------------------------------------------------------------------------caatgacacccctagtatcctgtctactttctcagccc--actttttaaaacattgactgaatttgtcaagcatattaatgaaagattaccattttgtttagGAAGAAGAATATCTTTAAGTTGGCACAAGGCGAGTACATTGCTCCTGAGAAGATTGAAAATGTATACGCCAAATGCAAATTTGTGGCGCAGTGCTTTGTA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 18
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                   ||||| |   |   ||  |||  |  |  |   ||   | |||                 ||   | | ||||| ||  | |    |     |   |||||   ||     |||||| ||     |||||||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||||||| || || |||||||||
------------------------------------------------------------------aatgacacccctagttgcctgtgtactttctcagcccaggtttt-----------------acagcattgacataatttgtcaggcatatgaatgaaagcttaccat-----gttgttgta-----gGAAGAAGAATATCTTTAAGTTGGCACAAGGGGAGTACATTGCTCCTGAGAAGATTGAAAACGTATATGCCAAATGCAAATTTGTGGCGCAATGCTTTGTA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 3'ss of exon 18
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatt-tcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                  |   || || | ||     ||  | ||   || | |  |          |  ||   ||  |  | |   | | ||  ||| ||     | ||   |    ||  ||   || ||||||||||| || || ||||| || || ||||| |||||||||||||||||||| || || ||||| |||||||||||||| | |||||||||  ||
---------------------------------------------------------------------------------agggagtgcaaagctctagtcttgggttacattttggggac---------ttgttg-gtatcttttgaatcgcgaatcatctgagtgaaattttctgatcctttgaat---agAAAGAAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCCAGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: PP1S408_23V6.1 (Physcomitrella patens), 3'ss of exon 20
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                           | || ||      | | |||    || |  |  ||    ||  | |||      ||   |||| |  ||| |   | |  | | |    |   | ||  |||||||||||| || ||||||||||| |||||||||||||| || || ||||| || |||||||| ||   |    |    ||  |  | ||||| |   ||
-------------------------------------------------------------------------------------------tgtcgtgagtggatcaatttagcttttactttttcaggaatgttcacaagtagtatgttctgttc--ttcgtgtttgttgagtcattcatcacacattgcagGAAGAAGAATATCTTTAAGTTGGCTCAAGGAGAGTACATTGCCCCGGAGAAGATCGAGAATGTCTACCTTCGCAGTCGTTTCATAACACAGTGTTACATA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: PP1S12_178V6.2 (Physcomitrella patens), 3'ss of exon 20
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaa-agttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                    | |||    ||||    || |||   ||| | |   | ||   | |||   |  |     || | | | |||   | || | |||||||     | |   | | || |||||||||||||||||| ||||| || |||||||| ||||| || || || || ||||||||  | |||  |    |    ||| || | ||||| || |||
------------------------------------------------------------------------------------aagttttattctt----ctctgaaactgtaactagaaaaa---attat--ctggaagtggcagttcttatgctcatgtttgttttgtatcctttaatcactgtctg-cagGAAGAAGAACATTTTCAAGTTAGCTCAAGGAGAATACATTGCACCGGAAAAGATTGAGAACATTTATCTTCGCAGTCGGTTTATTTCGCAGTGTTTCGTA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: EFJ37488 (Selaginella moellendorffii), 3'ss of exon 19
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                                                                               | |    || ||  |   |    ||||  |   | ||  || | || |||||| ||||||||||||||| | ||||| || || |||||||| |||||||| ||||||||||| |||   ||| |||| || ||||| ||||| || || 
----------------------------------------------------------------------------------------------------------------------------------------------gtaacgtgctttgtgtcattcgattttgctt--gacgtcattttttgccagGAAAAAGAACATTTTTAAGCTTGCACAGGGTGAATACATAGCGCCAGAGAAGATTGAGAATGTCTATCAAAAAAGCAAGTTCGTTGCTCAGTGTTTCGTC

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: EFJ33980 (Selaginella moellendorffii), 3'ss of exon 19
gtaaagaccatatcatttttgttgacagttcttagacgaattaataatgactcctctctagttttggatgactcaattgactgtatgttcatatcttggtcctgtgattttgttattgatataatcgactataattacatacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                                                                                                                                               | |    || ||  |   |    ||||  |   | ||  || | || |||||| ||||||||||||||| | ||||| || || |||||||| |||||||| ||||||||||| |||  |||| |||| || ||||| ||||| || || 
----------------------------------------------------------------------------------------------------------------------------------------------gtaacgtgctttgtgtcattcgattttgctt--gacgtcattttttgccagGAAAAAGAACATTTTTAAGCTTGCACAGGGTGAATACATAGCGCCAGAGAAGATTGAGAATGTCTATCATAAAAGCAAGTTCGTTGCTCAGTGTTTCGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889597|gb|DT038652.1|DT038652
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|110414986|gb|EC980854.1|EC980854
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|46917646|gb|CN546975.1|CN546975
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|71882993|gb|DT032048.1|DT032048
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|161720583|gb|FC069911.1|FC069911
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAATTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|46917526|gb|CN546855.1|CN546855
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|71881187|gb|DT030242.1|DT030242
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|161720400|gb|FC069849.1|FC069849
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAAAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
EST: gi|71882474|gb|DT031529.1|DT031529
EST:     GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAG                         GAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA
genomic: GGAGACATAGGTTTATGGTTACCTGGAGGTCGCCTAAAGATCATTGATAGgtaaagacca ... tatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacttcattacctgtgcatttcttagctttgtattaaaagttgttatatgacagGAAGAAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTA
                            tttgtattaaaagttg  TA-rich tract