Sequence
atgc intronic sequence ATGC exonic sequencegtgtgtaatctttcttgccatgtcttgctgctttggtgatccataacctactttgtatgcacactttattcatttttgtttctatttttttttttaaatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA07G38050.2 (Glycine max), 3'ss of exon 18
gtgtgtaatctttcttgccatgtcttgctgctttggtgatccataacctactttgtatgcacactttattcatttttgtttctatttttttttttaaatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAG
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gtgggtaaccta---------aacttactgattaaacaattccaggtttagctt--attcaatgtgtatagatgct-gctgctaatatactgtttaaaaaaatcagCAAGCACATCAGAAGAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 18
gtgtgtaatctttcttgccatgtcttgctgctttggtgatccataacctactttgtatgcacactttattcatttttgtttctatttttttttttaaatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAG
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---------gtaggtaacctaaacttactgattaaacaatttcaggtttagcttattca-atgtgataaatgctgctgctaatatgctgttttaaaaaaatca--gCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA13G28720.1 (Glycine max), 3'ss of exon 18
gtgtgtaatctttcttgccatgt-cttgctgctttggtgatccataacctactttgtatgcacactttattcatt-tttgtttctatttttttttttaaatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAG
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----gtaggtgtaatcaaaatgaatttgcta--ttgttcatgttttagct--ttagctcaatgaattggtgtattgtttggtgcttattattttataaaatt--gcagCAAACACACCAGAAGAATCAGATAAAGGATTCAATAGATGTTGATGAACCGGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28967912|gb|CB346945.1|CB346945EST: ACACACAAAGGCTGAATGAGTTGTATGAGAAAGAAGTGCGGTACCTCATG CAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCT
genomic: ACACACAAAGGCTGAATGAGTTGTATGAGAAAGAAGTGCGGTACCTCATGgtgtgtaatc ... aatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtatgcacactttattcatttttgtttctatttttttttttaaatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAG
actttattcatttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtaatctttcttgccatgtcttgctgctttggtgatccataacctactttgtatgcacactttattcatttttgtttctatttttttttttaaatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG