1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atgtctttggaaaatgttgattcgatttgtttattttcgtgtcttaaccatctatatgcatttgtgcgatcaaatttctaacccaagacttgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAAAGTTAGATCTCAGGTACCATCGTCTACATCTTTTCACACAGAAAATGC
species | Vitis vinifera |
transcript | Vv02s0025g01410.t01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAG AATGTTATTGACAAAATGTACCACAGCATAAACAAGCCCAGTGCCTGAAGAEST: gi|110375957|gb|EC940989.1|EC940989
genomic: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAGgtagctcctc ... tgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
EST: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAG AATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAEST: gi|27580341|gb|CB003036.1|CB003036
genomic: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAGgtagctcctc ... tgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
EST: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAG AATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAEST: gi|352781554|gb|FQ468398.1|FQ468398
genomic: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAGgtagctcctc ... tgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
EST: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAG AATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAEST: gi|32245315|gb|CD711134.1|CD711134
genomic: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAGgtagctcctc ... tgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
EST: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAG AATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAEST: gi|27755362|gb|CB036117.1|CB036117
genomic: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAGgtagctcctc ... tgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
EST: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAG AATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAEST: gi|110407574|gb|EC973176.1|EC973176
genomic: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAGgtagctcctc ... tgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
EST: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAG AATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
genomic: TCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTAAAATATTATCAGgtagctcctc ... tgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGA
aaccatctatatgcatttgtgcgatcaaatttctaacccaagacttgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAAAGTTAGATCTCAGGTACCATCGTCTACATCTTTTCACACAGAAAATGC
ttctaac putative branch site (score: 1)
aaatttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtctttggaaaatgttgattcgatttgtttattttcgtgtcttaaccatctatatgcatttgtgcgatcaaatttctaacccaagacttgtgtcacagAATGTTATTGACAAAATGTACAAAAGCATAAACAAGCCCAGTGCCTGAAGAAAGTTAGATCTCAGGTACCATCGTCTACATCTTTTCACACAGAAAATGC
- - - - ggaaaat
- - - - - - - - - - - - - - - - - - - - - - -aaccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaaga