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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttatatcctgaatcgataaacaaggaaagattaagattagctgagtgaccatgtgccttcattgcagAGTGCTCCATTTGGTGGGTTTAAGCAGTCTGGTCTTGGACGTGAAGGATCCAAGTATGGGTTGGATGATTTTCTAGAA

Basic information

species Vitis vinifera
transcript Vv19s0085g00860.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00860.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT1G79440.1 (Arabidopsis thaliana), 3'ss of exon 18
gtgagtcttatatcctgaatcgataaacaaggaa----agattaagattagctgagtgaccatgtgccttcattgcagAGTGCTCCATTTGGTGGGTTTAAGCAGTCTGGTCTTGGACGTGAAGGATCCAAGTATGGGTTGGATGATTTTCTAGAA
       | | | |  | ||  |  ||| | |        ||||     |      ||   |  |   || |||||||   |||||||| || ||  | |||||||||||||||||| | |||||||||||||||||  |||| || |  || || 
------gtaagaccagggatgaaagaaccacgttctcctaattatagccatacatatgcttacatcttttgattgcagGTGGCTCCATTCGGGGGAGTGAAGCAGTCTGGTCTTGGAAGGGAAGGATCCAAGTATGGTATGGACGAATACCTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgataaacaaggaaagattaagattagctgagtgaccatgtgccttcattgcagAGTGCTCCATTTGGTGGGTTTAAGCAGTCTGGTCTTGGACGTGAAGGATCCAAGTATGGGTTGGATGATTTTCTAGAA
                                           ccttcatt  CT-rich tract
             aaagattaagatta  TA-rich tract