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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttgtcctagttcattgtgctctacttaggtggatagtcctctggtttttgttttgacttacaattttaaataaaacaaatttttaattaatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAATGGGTAAACAAGATAAGCAGTGTTATTCAACCTTCCAAAGGGGGTCAAAT

Basic information

species Vitis vinifera
transcript Vv18s0089g00350.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GRMZM2G157462_T01 (Zea mays), 3'ss of exon 17
gtttgttcttgtcctagttcattgtgctctacttaggtggatagtcctctggtttttgttttgacttacaattttaaataaaacaaatttttaattaatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAATGGGTAAACAAGATAAGCAGTGTTATTCAACCTTCCAAAGGGGGTCAAAT---
  ||| | |   | |   || |   ||| ||   || || ||   | |   |||| ||||||   ||| |||| |             ||    | ||| ||||||| ||||||||||| ||| | ||||| ||||| ||||| || || ||||| |||||||| ||||| |    |||||||||      ||||||||||    |   
-gttgatatacccttgaatcgtacagct-tatggagttgtatttgctttgtgtttctgtttt--tttataattct-------------ttgctttaaattttgcagCTCACAGTGCTGTTGTGTTAAAGGCTGAGAGCATGGCCGACAAGGTTGAGTGGGTAAATAAGATCAAAGCTGTTATTCAGAG---CAAAGGGGGTTCTTTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719802|gb|FC065762.1|FC065762
EST:     TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
EST: gi|32270986|gb|CD720145.1|CD720145
EST:     TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
EST: gi|161714373|gb|FC063214.1|FC063214
EST:     TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
EST: gi|37185438|gb|CF604791.1|CF604791
EST:     TCTTGTTTTC-AGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgttttgacttacaattttaaataaaacaaatttttaattaatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAATGGGTAAACAAGATAAGCAGTGTTATTCAACCTTCCAAAGGGGGTCAAAT
       ttttgacttacaattt  TA-rich tract