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...agaagctgcagcttttactgagttaatagtatctgaaaaaagaacaaagaaaattgttgatgttttgaacatgttaattcttatcttcttttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACCTGATACACCATAAATACTGAGCTCCTCAGATTACAAGTCTCTGGCCAAT
species | Vitis vinifera |
transcript | Vv18s0041g00100.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAA AACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACCEST: gi|22014156|gb|BQ799190.1|BQ799190
genomic: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAAgtaagattct ... ttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACC
EST: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAA AACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACCEST: gi|30330351|gb|CD013613.1|CD013613
genomic: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAAgtaagattct ... ttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACC
EST: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAA AACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACCEST: gi|30127173|gb|CB912512.1|CB912512
genomic: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAAgtaagattct ... ttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACC
EST: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAA AACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACCEST: gi|27585306|gb|CB008001.1|CB008001
genomic: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAAgtaagattct ... ttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACC
EST: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAA AACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACC
genomic: AAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAAgtaagattct ... ttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACC
aaagaaaattgttgatgttttgaacatgttaattcttatcttcttttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACCTGATACACCATAAATACTGAGCTCCTCAGATTACAAGTCTCTGGCCAAT
ttttaat putative branch site (score: 3)
ttcttatcttctttt CT-rich tract
ttaattcttatcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagctgcagcttttactgagttaatagtatctgaaaaaagaacaaagaaaattgttgatgttttgaacatgttaattcttatcttcttttaattgcagAACCGATACTTTGCTGCATTTTGGACAATGAGAAAGAAACCAGTGGCAACCTGATACACCATAAATACTGAGCTCCTCAGATTACAAGTCTCTGGCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - -ctgcagc
- - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacatg