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gtctgtctgtctgtctgtctctctcacacacacacacacaatatgccccatgcaattacatggtggaataacagtttgtttgcataaagaacatgttggcatcagaaaataccctttatttgttcccaactaattggccttgtcttgctgcctccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGGCCATTTGGGTCCCTGAAACGAAGGGCAGAGCTCTGGAAGAAATTCAGTT
species | Vitis vinifera |
transcript | Vv18s0001g12560.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|110384138|gb|EC948555.1|EC948555
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|28968713|gb|CB347746.1|CB347746
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|33404093|gb|CF209720.1|CF209720
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCACGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGATTGTGAGTGCTTTCACAGTTEST: gi|27579979|gb|CB002674.1|CB002674
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTT
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|110382391|gb|EC939356.1|EC939356
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|30322190|gb|CD005452.1|CD005452
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|30295718|gb|CB972512.1|CB972512
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|110362730|gb|EC926280.1|EC926280
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|33404176|gb|CF209803.1|CF209803
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCACGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|351014223|gb|FQ434812.1|FQ434812
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|33402192|gb|CF207819.1|CF207819
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGGEST: gi|33402179|gb|CF207806.1|CF207806
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
EST: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAG GAACCTTCACCATTTACATGGTTGTGAGTGCTTTCACAGTTGTGTTTGCGG
genomic: CTTTGTGGTTACCATGACTGCAAACTTGCTCTTGACTTGGAGCAGTGGAGgtctgtctgt ... ccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGG
ataccctttatttgttcccaactaattggccttgtcttgctgcctccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGGCCATTTGGGTCCCTGAAACGAAGGGCAGAGCTCTGGAAGAAATTCAGTT
aactaat putative branch site (score: 2)
ccttgtcttgctgcct putative PPT
tttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtctgtctgtctgtctctctcacacacacacacacaatatgccccatgcaattacatggtggaataacagtttgtttgcataaagaacatgttggcatcagaaaataccctttatttgttcccaactaattggccttgtcttgctgcctccttcaacagGAACCTTCACCATTTACATGGTTGTGAGTGTTTTCACAGTTGTGTTTGCGGCCATTTGGGTCCCTGAAACGAAGGGCAGAGCTCTGGAAGAAATTCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA