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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaaagttgtccatttgcaattctgaaattattggacttaaaattaatatcttgcttgtagtaacctatccaattttcagGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTG

Basic information

species Vitis vinifera
transcript Vv18s0001g08140.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08140.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA06G09580.1 (Glycine max), 3'ss of exon 20
gtatgtgaaagttgtccatttgcaattctgaaattattggacttaaaattaatatcttgcttgtagtaacctatccaattttcagGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTG
||| |   |    || |||| || | |     | || |||| |||   || | |||||  | |   ||   | |  ||||||||||||||||| |||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |||| | |||
gtaaggagattcagtgcattggccaat-----aatactggatttac--ttcaaatcttcatggctctattgt-ttaaattttcagGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG

upper sequence: Vv18s0001g08140.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA04G09480.1 (Glycine max), 3'ss of exon 21
gtatgtgaaagttgtccatttgcaattctgaaattattggacttaaaattaatatcttgcttgtagtaacctatccaattttcagGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTG
||| |   |   |||  ||| |  | |     | || |||| |||   || | |||||  | |   ||   | |  ||||||||||||||||| |||||  |||||||||| |||||||||||||| ||||||||||||||||||| |||| |  ||
gtaaggagattctgtgtattgggcaat-----aatactggatttac--ttcaaatcttaatggctatattgt-ttaaattttcagGTTGATCAAACTCCGCTGCCTCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCAATG

upper sequence: Vv18s0001g08140.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT1G27595.1 (Arabidopsis thaliana), 3'ss of exon 15
gtatgtgaaa-gttgtccatttgcaattctgaaattattggacttaaaattaatatcttgcttgtagtaacctatccaattttcagGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTG
|||||| |||  |  |  |   | | |||      ||||    |  | ||| | ||||        || |    |     |||||||||||||  |||||  ||||| ||||||||||| |||| || || |||||||| ||||||| ||| || || 
gtatgtcaaatatcatggaaaagaacttcc-----tatttagttagatattgagatct--------gtgatactttttggtttcagGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattattggacttaaaattaatatcttgcttgtagtaacctatccaattttcagGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTG
                                 tagtaac  putative branch site (score: 1)
                                       cctatcc  CT-rich tract
          acttaaaattaatatc  TA-rich tract