Sequence
atgc intronic sequence ATGC exonic sequence...agtttagaatactgatttagcatgggtttccctgggttagtgtagaattttaaatatgggccatatcattctatattttattgtctggtataaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGATTGATTAAGCATCGATTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA14G36070.1 (Glycine max), 3'ss of exon 17
agtttagaatactgatttagcatgggtttccctgggttagtgtagaattttaaatatgggccatatcat-tctatattttattgtctggtataaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGA-TTGATTAAGCATCGATTCC
|| | | ||| | | || | | | || ||| | | | | || |||| | | ||||| | |||| |||||||||||||| || || ||||| ||||||||||| || ||||| || | || ||||||||||||||||||||||||| | || | | || ||
gacataagctttttattgaataaacacttaatttttgcctaattgcatcttatgt-taatcagaactatgtctacaaccatgtttctgggtttaatttcagGAAAATGTGGACTCTTCAAAGGCAGAGGCTATAGTTAAAAAACTCCAGATGGATGGACGTTATCTTAGAGATGTCTGGTAAATTTTCTGATTATTCATCT-
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA06G10180.2 (Glycine max), 3'ss of exon 17
agtttagaatactgatttagcatgggtttccctgg-gttagtgtaga---attttaaa--tatgggccatatc--attctatattttattgtctggtataaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGATTGAT-TAAGCATCGATTCC
|| | | | || ||| | | | || | | | | | | ||||| | | | | | | | | |||| | |||| |||||||||||||| || | ||||| |||||||||||||| |||||||| | || |||||||| || || ||||| |||||||| | | | ||| |
--------tcaccattccaacgtgaattttttagttgcaattgcacatacactccatacctatggaatgaaactgacttaaagatcttgtttctgcattcaatttcagGAAAATGTGGACTCGACAAAGGCTGAGGCTATAGTGAAAAAACTTCAGATGGATGGACGTTACCTAAGGGATGTGTGGTGATTTTTCTGATCATTCTTCT-
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA02G37850.1 (Glycine max), 3'ss of exon 17
agtttagaa--tactgatttagcatgggtttccctgggttagtgtagaattttaaatatgggccatatcat-tctatattttattgtctggtataaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGA-TTGATTAAGCATCGATTCC
|| | || | | ||| | | || | | | || ||| | | | | | || |||| | | ||||| | |||| |||||||||||||| | || || || ||||||||||| || ||| | || | || ||||||||||||||||||||||||| | || | | || ||
--ttgacaagctttttattgaataaacacttaatttttgcctgattgcatcttatgt-taatcaaaactatgtctacaaccatgtttctgggtttaatttcagGAAAATGTGGACCCTTCAAATGCAGAGGCTATAGTAAAAAAATTCCAGATGGATGGACGTTATCTTAGAGATGTCTGGTAAATTTTCTGATTATTCATCT-
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA04G10200.1 (Glycine max), 3'ss of exon 17
-agtttagaata-ctgatttagcatgggtttccctgggtta-gtgtagaattttaaatatgggccatatcattctatattttattgtctggtataaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGATTGAT-TAAGCATCGATTCC
|||||| | |||||| | ||| | | || || | ||| | | || | | || || |||| | |||| |||||||||||||| || | ||||| |||||||||||||| |||||||| | || |||||||| || || || || |||||||| | | | ||| ||
gtgtttagtttttctgattcaccattccaatatacactccatacctataacctatggaatgaaactgac--ttaaagaccttgtt-tctgcattcaatttcagGAAAATGTGGACTCGACAAAGGCTGAGGCTATAGTGAAAAAACTTCAGATGGATGGACGTTACCTAAGGGACGTATGGTGATTTTTCTGATCATTCATCT-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30125286|gb|CB910625.1|CB910625EST: GTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAG GANAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACA
genomic: GTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaacca ... taaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttaaatatgggccatatcattctatattttattgtctggtataaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGATTGATTAAGCATCGATTCC
atatcattctatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtttagaatactgatttagcatgggtttccctgggttagtgtagaattttaaatatgggccatatcattctatattttattgtctggtataaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGATTGATTAAGCATCGATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - -agaatac
- - - - - - - - - -gcatggg
- - - - - - - - - - - - - - tccctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgg