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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccttcttatttttgggcatgagttggtgtttgtttttctttcctttggtgctccttgatgtggaaatcagagggggacagaatgcttggtgtttttgttcttcacgatcaggacacaagctactaacgcccatcttttgattctatacacagTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACAT

Basic information

species Vitis vinifera
transcript Vv18s0001g00910.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 17
gtaagcc-ttcttatttttgg------gcatgagttggtgtttgtttttctttcctttggtgctccttgatgtggaaatcagagggggacagaatgcttggtgtttttgttcttcacgatcaggacacaagctactaacgc-ccatcttttgattctatacacagTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACAT
||| ||  || |||||  |        |||||         |  |  ||||| |      |   | || || |      ||           |    ||  | |   | | ||  |  || |      |   |  | ||   |  | | |   ||   |   ||| |    || ||||| ||||| ||||| ||||||||||  |||||||||| | |||| |||||||||||||| || ||||| || || || ||||||||||
gtatgctatttttattactaatccattgcatggtagaacaatcatccttcttcctcaaactaaacttttatttttttcccaagttatttttcatgatttattatcaatatcctcga-aataaaattttattttcttcacctactgtatctctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT

upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 17
gtaagc--cttcttatttttgg------gcatgagttggtgtttgtttttctttcctttggtgctccttgatgtggaaatcagag-ggggacagaatgcttggtgtttttgttcttcacgatcaggacacaagctactaacgcccatcttttgattctatacacagTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACAT
||| ||  ||| |||||  |        |||||            |  ||||| |      |   | ||  | |      ||       | ||  ||   | ||  || |  ||| |    |    | | |   | ||    |   | | |   ||   |   ||| |    || ||||| ||||| ||||| ||||||||||  || ||||||| | |||| |||||||||||||| || |||||||| || || ||||||||||
gtatgctactttttattagtaatccattgcatggtagaacaaacatccttcttcctcaaactaaacttttcttttttccccaagttattgtcatgatttattgtcattattctctccgtcgtttcaaaagacatttcttgacctactgtatctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACAT

upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 17
gtaagccttcttatttttgggcatgagttggtgtttgtttttctttcctttggtgctccttgatgtggaaatcagagggggacagaatgcttggtgtttttgttcttcacgatcaggacacaagctactaacgcccatcttttgattctatacacagTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACAT
        | | |   |||||  ||     |  |    |  ||||     |   |||||||||   |    |   |     | | | || | |  || |  ||| ||  |  |    ||  ||| | |         ||| |         |  ||| |    || ||||| ||||||||||||||| |  ||||||||||||| | | |||| |||||||| ||||| || |||||| ||||||||||||||||||
-------gtataacaattgggtttgtacaaggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagtttttttctttgcctacttaagtttcc--------tctctc--------atgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcacgatcaggacacaagctactaacgcccatcttttgattctatacacagTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACAT
                                     ttttgatt  TA-rich tract