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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcccagcttctaataatttgaattctgtgagtttattgtaaagtagtatttacaagattcagttatatgctgttctttccttgccagGCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAG

Basic information

species Vitis vinifera
transcript Vv17s0000g04200.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 17
gtgagtttcccagcttctaataatttgaattctgtgagtttattgtaaagtagtatttacaagattcagttatatgctgttctttccttgccagGCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAG
|| ||  | ||    | || || ||    || | | | |  | | | |   | ||   |   || ||  |||| || | | ||   |||||||||||||| || |||||||||||| | ||||||||||||||||||
gtaagactaccgaaat-tattatttcattttatctcattcaactttca--caatacgaa-gtgactc--ttat-tggtatactactcttgccagGCCAAACGATTTTCATGACTTTGCCGAGTATTTTGTTCTTGAG

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA05G07920.1 (Glycine max), 3'ss of exon 17
gtgagtttcccagcttctaataatttgaattctgtgagtttattgtaaagtagtatttacaagattcagttatatgctgttctttccttgccagGCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAG
             || || | ||| | | |||  |   | |  |  ||  | |  | ||  |  |         |  || | |    ||||||||||||| || ||||| |||||| ||||||||||||||||||||
-------gtaagactactgaaaatattatttcattttctctcattcaactttggctatatgaagtgactactcttattggtatactattgccagGCCAAACGATTTTCAAGACTTTGCTGAGTATTTTGTTCTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgtaaagtagtatttacaagattcagttatatgctgttctttccttgccagGCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAG
                                     ctgttctttccttgcc  CT-rich tract
      taaagtagtattta  TA-rich tract