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gttcgtagtttacgttttggccattggtttcacaactaattttaatctttgcttttgacaaaaatgtatcttgagtgcagCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
species | Vitis vinifera |
transcript | Vv17s0000g04120.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGG CTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAGEST: gi|122691549|gb|EC980212.1|EC980212
genomic: TGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGGgttcgtagtt ... ttgagtgcagCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
EST: ATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGG CTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAGEST: gi|122691711|gb|EC982596.1|EC982596
genomic: ATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGGgttcgtagtt ... ttgagtgcagCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
EST: ATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGG CTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAGEST: gi|352782354|gb|FQ470257.1|FQ470257
genomic: ATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGGgttcgtagtt ... ttgagtgcagCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
EST: ATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGG CTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
genomic: ATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGGgttcgtagtt ... ttgagtgcagCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
ggtttcacaactaattttaatctttgcttttgacaaaaatgtatcttgagtgcagCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
aactaattttaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtagtttacgttttggccattggtttcacaactaattttaatctttgcttttgacaaaaatgtatcttgagtgcagCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG