Sequence
atgc intronic sequence ATGC exonic sequence...tgtcccaatgttacaaatcatttgaatagctgtccttcaaagagtttattcattctccagtcaaattttttattcctttacttaaaattctctgttgcagATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: LOC_Os03g50300.1 (Oryza sativa), 3'ss of exon 16
tgtcccaatgttacaaatcatttgaatagctgtccttcaaagagtttattcattctccagt----caaattttttat-tcctttacttaaaattctctgttgcagATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAG
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----ctggt-tgagttttcgttcacttttcctttttttttaaaacttatccatgtagcggaatgacaagtagcttatgtaacatcttttctatttgtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTATTTACATTGCTGTACAGAATGTCAGCTTTGAGCTATCTCAG
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA09G31920.2 (Glycine max), 3'ss of exon 9
tgtcccaatgttacaaatcatttgaatagctgtccttcaaagagtttattcattctccagtcaaattttttattcctttacttaaaattctc-tgttgcagATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAG
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tgtttttactttcgacttgggaagatcaagtgtattattccttcttctttcttgcacatgttat-tgttaagttaattgataaagaatcctcctgttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA07G09890.1 (Glycine max), 3'ss of exon 17
tgtcccaatgttacaaatcatttgaatagctgtccttcaaagagtttattcattctccagtcaaattttttattcctttacttaaaattc--tctgttgcagATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAG
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agttttaactttcgacttgggaagatcaagtgtattattccttcttcattcttacacatgtta--ctgttaatttaattgataaagaatcctccttttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattcattctccagtcaaattttttattcctttacttaaaattctctgttgcagATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAG
ttctctgtt CT-rich tract
tcaaattttttattcc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtcccaatgttacaaatcatttgaatagctgtccttcaaagagtttattcattctccagtcaaattttttattcctttacttaaaattctctgttgcagATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- -cccaatg
- - - - - - - aaatcat
- - - - - - - - - - - - - - - - -ccttcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaattc