Sequence
atgc intronic sequence ATGC exonic sequencegtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GRMZM2G006452_T01 (Zea mays), 3'ss of exon 11
gtgagtctattgcatcatgctagattacatggttcttttaattgatacta-aaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttca--gGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
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----------gtcagtatatcaatcctttagtgacttgttatatatcctgcagatgaactgtccctttaaatattgctgaaatgtctcttactcataagtgtgaaattggatcctaactcctacattctgtttctatagGGATTTCGGGTCTATATTCAGTACTCTTTTACCTGGTACAATGGCAAAACTTGATCCTCCAGAAGGTGGTACTTTTTTGGATGGTCTTGAAGTTCGTGTG
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA13G27210.1 (Glycine max), 3'ss of exon 18
gtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
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-------------------------------gaagaattagttcctaacagtgtgatttactgactaccctattattttataatttcat-----ttgataatggttgagtatcatgttcttattgtgttcatccagTGACTTTGGATCCATCTTTTCTACGCTACTACCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAGCTTCCTTGATGGTCTTGAGGTTCGTGTT
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA12G36520.1 (Glycine max), 3'ss of exon 18
gtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
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------------------------------------attagtttgtaacagactgaattactgactacccgattattttattgttctatttcatttgataatggttgagtattatgtttttattttgttcatccagTGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAGCTTCCTTGATGGTCTTGAGGTTCGTGTT
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT5G62410.1 (Arabidopsis thaliana), 3'ss of exon 17
gtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
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gtgagtgtctttc-taatctccaacaaagagtttgtctttgct----cttaggctcatgatctcattcctcaatg--------tctgaaaagataatatgatattagcctttgttaaatccttctttt-ttattagGGATTTCGGATCAATCTTTTCAACTCTACTACCTGGCACCATGGCAAAACTAGAACCTCCTGAAGACGGTAACTTCCTTGATGGTCTTGAGGTGCGTGTT
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT3G47460.1 (Arabidopsis thaliana), 3'ss of exon 17
gtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtc-tcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
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----------------------------------------------------gtgagttgcttatttagtttctttacttaa---ccatgtgattcacttctctttacgatatttaaagttggatccttatcgttagGGATTTTGGTTCCATCTTTTCAACTCTACTACCTGGCACCATGTCAAAATTAGAACCTCCAGAGGGAGGTACTTTCCTTGATGGTCTTGAGGTCCGTGTT
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: EFJ04936 (Selaginella moellendorffii), 3'ss of exon 17
gtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
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--------------------------------------------------------------------------gtaagctagcttcagccgttttgcttcatcccagc-ttcattgtttt------caacaccagGGATTTCGGATCCATTTTCTCCACATTGCTACCGGGATCAATGGCAAAGCTGGAACCTCCGGAAGGCTGCGGCTTTCTGGATGGCCTCGAGGTTCGCGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122692151|gb|EC993608.1|EC993608EST: GATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAA GGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCT
genomic: GATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctat ... tcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
agcttac putative branch site (score: 3)
tctcgttttc putative PPT
ttactattcataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG