Sequence
atgc intronic sequence ATGC exonic sequencegttcgttagatggccgaatgccttttactcaattattttaattatgctcatgagaatgattagaaatttattttgaaataaattggactgctttttctgcagTACTTTGCAAACTCTATATCTCGGCTTTTACTGCCTGTGGATGGTGCCCATGCTTCTTCCTGTGAAGAAATGGCTACAGCTATGTCCAGTGCAGAAACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: LOC_Os12g13590.1 (Oryza sativa), 3'ss of exon 17
gttcgttagatggccgaatgccttttactcaattattttaattatgctcatgagaatgattagaaatttattttgaaataaattggactgctttttctgcagTACTTTGCAAACTCTATATCTCGGCTTTTACTGCCTGTGGATGGTGCCCATGCTTCTTCCTGTGAAGAAATGGCTACAGCTATGTCCAGTGCAGAAACTG
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-------------------gtaatatgcagagtccactagactttac--actaagctgccaaacgatgaaccatgc--tgatttt--cctccttctctccagTACTTCTCAAATACTATATCTCGGCTCCTGCTGCCTGTGGATGGTGCCCACCCCTCAGCTTGTGAAGATATGGGATCAGCAGTATCTGTTGTTGAGGCTG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA07G05160.1 (Glycine max), 3'ss of exon 17
gttcgttagatggccgaatgccttttactcaattattttaatta-tgctcatgagaatgattagaaatttatt-ttgaaataaattggactgctttttctgcagTACTTTGCAAACTCTATATCTCGGCTTTTACTGCCTGTGGATGGTGCCCATGCTTCTTCCTGTGAAGAAATGGCTACAGCTATGTCCAGTGCAGAAACTG
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---------------gtacaatattgagcctttatttttaattaatattttttgctataaacaaaaccctatggctgaaatgagtaa-------ttttctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACATGCTGCTGCTTGTGAGGAAATGGCTACAGCAATGTCAAGTGCAGAGGCTG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA16G01660.1 (Glycine max), 3'ss of exon 17
gttcgttagatggccgaatgccttttactcaattattttaatta-tgctcatgagaatgattagaaatttattttgaaataaattggactgctttttctgcagTACTTTGCAAACTCTATATCTCGGCTTTTACTGCCTGTGGATGGTGCCCATGCTTCTTCCTGTGAAGAAATGGCTACAGCTATGTCCAGTGCAGAAACTG
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---------------gtacaatattgagccttgatttttaattaatattttttgctataaacaaaaccctat----aactgaaatgagtaa--ttctctgcagTACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCCGTTGATGGTGCACATGCTGCTGCTTGTGAGGAAATGGCTACAGCAATGTCAAGTGCAGAGGCTG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 18
-------------------------------------gttcgttagatggccgaatgc--cttttactcaattattttaattatgctcatgagaatgattagaaatt-tattttgaaa----taaattggactg--ctttttctgcagTACTTTGCAAACTCTATATCTCGGCTTTTACTGCCTGTGGATGGTGCCCATGCTTCTTCCTGTGAAGAAATGGCTACAGCTATGTCCAGTGCAGAAACTG
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gcatgttggattacttttatggttatcagttcgtttcaattatttcatctgagaaggcttctcctactcaactatta-aagtattcaaat-agtttgacccaatcttctacaatgaaaattctataatcatctaattttcttttccagTATTTTGCAAATTCTATATCTCGGCTTCTCCTACCAGTGGATGGTGCACATGCTGCTTCATGTGAAGAAATGTCAACTGCTCTGTCCAAAGCAGAGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgagaatgattagaaatttattttgaaataaattggactgctttttctgcagTACTTTGCAAACTCTATATCTCGGCTTTTACTGCCTGTGGATGGTGCCCATGCTTCTTCCTGTGAAGAAATGGCTACAGCTATGTCCAGTGCAGAAACTG
ctgctttttct CT-rich tract
agaatgattagaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcgttagatggccgaatgccttttactcaattattttaattatgctcatgagaatgattagaaatttattttgaaataaattggactgctttttctgcagTACTTTGCAAACTCTATATCTCGGCTTTTACTGCCTGTGGATGGTGCCCATGCTTCTTCCTGTGAAGAAATGGCTACAGCTATGTCCAGTGCAGAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA