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gtaatggaacatatatatttcccttcactcgcaacctatgcaaagtacaggcataaattgatcattctcgctgtatctcagGTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGCTTCACGTCTTAGAGCACAGACAGAGGGGTCATCGATTGTGGACAAGCTT
species | Vitis vinifera |
transcript | Vv15s0021g02140.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTCGAGTTAGTCTTGGAGAGCTGCAGATTGAACTAGAGAAAGAGAG GTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGCEST: gi|349827931|gb|FQ422799.1|FQ422799
genomic: AAGAGTCGAGTTAGTCTTGGAGAGCTGCAGATTGAACTAGAGAAAGAGAGgtaatggaac ... tgtatctcagGTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGC
EST: AAGAGTCGAGTTAGTCTTGGAGAGCTGCAGATTGAACTAGAGAAAGAGAG GTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGC
genomic: AAGAGTCGAGTTAGTCTTGGAGAGCTGCAGATTGAACTAGAGAAAGAGAGgtaatggaac ... tgtatctcagGTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGC
actcgcaacctatgcaaagtacaggcataaattgatcattctcgctgtatctcagGTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGCTTCACGTCTTAGAGCACAGACAGAGGGGTCATCGATTGTGGACAAGCTT
aattgat putative branch site (score: 4)
ttctcgct putative PPT
ataaattgatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggaacatatatatttcccttcactcgcaacctatgcaaagtacaggcataaattgatcattctcgctgtatctcagGTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGCTTCACGTCTTAGAGCACAGACAGAGGGGTCATCGATTGTGGACAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT