1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...tattatttactgtggtagaaaccatacaacatggaaaattttggaacttgaagttctaaataattctaattatttctggaatccctatttggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAAGAAAATATTGCGATATGACGTTGCTTTCTTGTGCATATGCTGGAACTG
species | Vitis vinifera |
transcript | Vv12s0028g03130.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAG GAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAEST: gi|30304206|gb|CB981000.1|CB981000
genomic: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAGgtaatcctta ... ggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
EST: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAG GAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAA-TAEST: gi|110707945|gb|EE084922.1|EE084922
genomic: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAGgtaatcctta ... ggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
EST: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAG GAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAEST: gi|30305222|gb|CB982016.1|CB982016
genomic: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAGgtaatcctta ... ggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
EST: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAG GAAAGCGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAEST: gi|110699529|gb|EE076605.1|EE076605
genomic: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAGgtaatcctta ... ggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
EST: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAG GAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAEST: gi|30305288|gb|CB982082.1|CB982082
genomic: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAGgtaatcctta ... ggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
EST: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAG GAAAGCGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAEST: gi|37187493|gb|CF606846.1|CF606846
genomic: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAGgtaatcctta ... ggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
EST: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAG GAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
genomic: TCACAAGACTTTTGCCTCTTGGTCTTGGTCTTCTTTACCTTGGGAAGCAGgtaatcctta ... ggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATA
acttgaagttctaaataattctaattatttctggaatccctatttggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAAGAAAATATTGCGATATGACGTTGCTTTCTTGTGCATATGCTGGAACTG
ttctaat putative branch site (score: 2)
aagttctaaataattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattatttactgtggtagaaaccatacaacatggaaaattttggaacttgaagttctaaataattctaattatttctggaatccctatttggtgtgacagGAAAGTGTGGAGGCCACTGCTGAAGTGTCAAAGACATTTAATGAAAAAATAAGAAAATATTGCGATATGACGTTGCTTTCTTGTGCATATGCTGGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - -ccataca
- - - - - - - - - - - - - - - - ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgg