Sequence
atgc intronic sequence ATGC exonic sequencegtatctcctgttctattctgtcctttttattcaaatatgtacctgtactgttgagtggatttcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA17G12950.1 (Glycine max), 3'ss of exon 18
-----------gtatctcctgttctattctgtcct-ttttattcaaatatgtacctgtactgttgagtggatttcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
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gtattcaccagatatatgtgatttttttttataaaattatgtatagaataatatattttctcataaatggatttcaactttt-gtgtggatgcagGTTGGTGGCATCTATGTTAGGCTGTTTCTGAAAGATCCCAAATTCCCTCTTAGAAACCCTAAAAGGTTCTTGGAAGGTCTACTAGATCAGTATTTGTCGT
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 17
-------------------gtatctcctgttctattctgtcctttttattcaaatatgtacctgtactgttgagtggatttcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
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ctgatgtatgtgatatataatataattcgttttttgataaaattatgtataaaata-atatatattctcataaatggatt-caaacttttgtgcggatgcagGTTGGTGGCATCTATGTTAGGTTGTTTCTGAAAGATCCCAAATTCCCTCTTAGAAACCCTAAAAGGTTCTTGGAAGGTCTACTAGATCAGTATTTGTCAT
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: PP1S60_221V6.1 (Physcomitrella patens), 3'ss of exon 18
------------------------------------------------------------------------------------------------gtatctcctgttctattctgtcctttttattcaaatatgtacctgtactgttgagtggatt-tcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
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gtctgcacatttttttatcgtgcttttctgtatttaagaatgccaaagttgacatttcgtaaactgtctttaatgtcgtagacttactctcgtgggttcattggtgattgatataattttcttttttttcgtat-cctccatgttatttgcttcattgttttgtactttttatcct-cagGTTGGTGGAGTGTATGTCCGCTTGTTCCTGAAAGATCCAAAATTCCCTCTTAGAAACCCTAAGCGGTTCTTAGAAGGGTTGCTAGACCAATATGTGACAG
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: EFJ24089 (Selaginella moellendorffii), 3'ss of exon 18
gtatctcctgttctattctgtcctttttattcaaatatgtacctgtactgttgagtggatttcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
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---------------gtagatttttttaattcc--tcaatctttgatctatcgtaacgctttta----tttcttgctgtgcagGTTGGCGGAGTGTACGTAAGATTGTTCCTGAAAGATCCAAAGTTTCCTCTTCGGAATCCCAAGAGGTTTTTGGAAGGACTTCTGGATCAGTATGTAGCCG
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: EFJ35138 (Selaginella moellendorffii), 3'ss of exon 18
gtatctcctgttctattctgtcctttttattcaaatatgtacctgtactgttgagtggatttcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
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--------------gtagattttttttaattcc--tcgatctttgatctatcgtaacgctttta----tttcttgctgtgcagGTTGGCGGCGTGTACGTAAGATTGTTCCTGAAAGATCCGAAGTTTCCTCTTCGGAATCCCAAGAGGTTTTTGGAAGGACTTCTGGATCAGTATGTAGCCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964993|gb|GW838796.1|GW838796EST: ATGTGCCTGAGCAGGCATCTGGCCAGCAGGAAATGAGAGATGAGCCACAG GTTGGAGGAATCTATGTTAGGCTTTTCCTGAAAGATCCCAAGTTTCCTCTT
genomic: ATGTGCCTGAGCAGGCATCTGGCCAGCAGGAAATGAGAGATGAGCCACAGgtatctcctg ... ggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTT
EST:
gi|110374849|gb|EC939787.1|EC939787EST: ATGTGCCTGAGCAGGCATCTGGCCAGCAGGAAATGAGAGATGAGCCACAG GTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTT
genomic: ATGTGCCTGAGCAGGCATCTGGCCAGCAGGAAATGAGAGATGAGCCACAGgtatctcctg ... ggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcaaatatgtacctgtactgttgagtggatttcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
atttcaaattttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatctcctgttctattctgtcctttttattcaaatatgtacctgtactgttgagtggatttcaaattttcatggtcatgcagGTTGGAGGAATCTATGTTAGGCTTTTCTTGAAAGATCCCAAGTTTCCTCTTAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATCTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG