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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgcagctgatcattgccttcatcttcttcttcttcttcttccattttctgttggcctgttgcttttacctggactatcattagttttgttttacttttactaagcactgtacaattttcttgaccagCTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTTCGTTCATGCCTGTCACCTTGAGCTGTGATCACCGTGTAATTGATG

Basic information

species Vitis vinifera
transcript Vv11s0016g01870.t01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110364343|gb|EC923926.1|EC923926
EST:     TTGTGCCATAATCAATCCTCCCCAATCCGGCATCCTCGCAGTTGGGTCTG                         CTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTT
genomic: TTGTGCCATAATCAATCCTCCCCAATCCGGCATCCTCGCAGTTGGGTCTGgtatgctgca ... tcttgaccagCTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTT
EST: gi|110361992|gb|EC925498.1|EC925498
EST:     TTGTGCCATAATCAATCCTCCCCAATCCGGCATCCTCGCAGTTGGGTCTG                         CTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTT
genomic: TTGTGCCATAATCAATCCTCCCCAATCCGGCATCCTCGCAGTTGGGTCTGgtatgctgca ... tcttgaccagCTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTT
EST: gi|30131574|gb|CB916913.1|CB916913
EST:     TTGTGCCATAATCAATCCTCCCCAATCCGGCATCCTCGCAGTTGGGTCTG                         CTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTT
genomic: TTGTGCCATAATCAATCCTCCCCAATCCGGCATCCTCGCAGTTGGGTCTGgtatgctgca ... tcttgaccagCTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatcattagttttgttttacttttactaagcactgtacaattttcttgaccagCTGAGAAGAGGGTAATACCTGGTGTGGGTCCTGACCAATTCAAGTATGCTTCGTTCATGCCTGTCACCTTGAGCTGTGATCACCGTGTAATTGATG
                                          ttttctt  CT-rich tract
      attagttttgttttac  TA-rich tract