Sequence
atgc intronic sequence ATGC exonic sequence...ctgatttaaaatatcatggtttcttttatataaattgaaccttgtgtcatggctttatggttatcctgttactcaagtaatgtataattaatcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAAACAAATGACAAATCAAAGATTTGGAAGCTCACTGAAATCAATGAAACGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA07G03180.1 (Glycine max), 3'ss of exon 16
ctgatttaaaatatcatggtttcttttatataaattgaaccttgtgtcatggct-ttatggttatcctgttactcaagta-atgtataattaatcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAAACAAATGACAAATCAAAGATTTGGAAGCTCACTGAAATCAATGAAACGT
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ataatttattcttcctttatt-cggtaataggaatggttgtacttattatggtgattattatt-tattaatatttaactatatgtctatttcatcttgttagAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCTAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAACGAACAAT
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 18
ctgatttaaaatat-catggtttcttttatataaattgaaccttgtgtcatggctttatggttatcc--tgttactcaagta-atgtataattaatcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAAACAAATGACAAATCAAAGATTTGGAAGCTCACTGAAATCAATGAAACGT
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-taatttattttcttcctttattcgataataggaatggctgtacttatcatatggtgattattatttattaatatttaactatatgtctattt---cttgtcagAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACAAT
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA13G44420.2 (Glycine max), 3'ss of exon 18
ctgatttaaaatatcatggtttcttttatataaattgaaccttgt-gtcatggctttatggttatcctgttactcaagtaatgtataa--ttaatcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAAACAAATGACAAATCAAAGATTTGGAAGCTCACTGAAATCAATGAAACGT
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---ataaaacctgtcactgtgattttttaatgtatttattatcgttactacttacttttgtttttgttattattgatactatctgtcaatttcaaatcatcagAACGGGGATGCCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGATAAGTCGAAGATATGGAAGCTCACTGAAATCAATGAACCAT
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA15G00880.1 (Glycine max), 3'ss of exon 17
--ctgatttaaa-atatcatggt--ttcttttatataaattgaaccttgtgtcatggctttatggttatcctgttactcaagtaatgtataattaatcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAAACAAATGACAAATCAAAGATTTGGAAGCTCACTGAAATCAATGAAACGT
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aagtggtttaagcgtgtcactgtgattgtttta-atgtatttattattgt-tcctattttttttgttattat-tgatacaatc--tgtcaatttcaaatcatcagAATGGGGATGCCCGGAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGATAAGTCAAAAATATGGAAGCTAACTGAAATCAATGAACCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861393|gb|DT010448.1|DT010448EST: GCAGACAGAGGTGCATCTGTGGTTGCTATTGCTGGAATG AATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAA
genomic: GCAGACAGAGGTGCATCTGTGGTTGCTATTGCTGGAATGgtgtgttaac ... atcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAA
EST:
gi|71862780|gb|DT011835.1|DT011835EST: GTGCTGGACTAGCAGACAGAGGTGCATCTGTGGTTGCTATTGCTGGAATG AATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAA
genomic: GTGCTGGACTAGCAGACAGAGGTGCATCTGTGGTTGCTATTGCTGGAATGgtgtgttaac ... atcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcatggctttatggttatcctgttactcaagtaatgtataattaatcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAAACAAATGACAAATCAAAGATTTGGAAGCTCACTGAAATCAATGAAACGT
aattaat putative branch site (score: 3)
tcttgtt CT-rich tract
taatgtataattaatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgatttaaaatatcatggtttcttttatataaattgaaccttgtgtcatggctttatggttatcctgttactcaagtaatgtataattaatcttgttagAATGGGGACGCCAGAAACATGGGGGATGTGAAACCCAGATTAGCTGAAGAAACAAATGACAAATCAAAGATTTGGAAGCTCACTGAAATCAATGAAACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - -aaaatat
- - - - - - - catggtt
- - - - - - - - - - - - - - - -aaattga
- - - - - - - - - - - - - - - - - - - -ccttgtg
- - - - - - - - - - - - - - - - - - - - - - - tcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaagta