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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaaacatattactatatatcaaaattcttctgagatggtgaagttttgggctttgagctgacatatatggctatatgagcagGAGAAACAAGGCTCTGGTGAAGGAGTTGAGCACCCCACCACCAGGGGCAAAGGATCTCTACTTCCTCACACAGTATTCTCAGTCCATATGGGGACAATTC

Basic information

species Vitis vinifera
transcript Vv09s0002g03640.t01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721191|gb|FC070409.1|FC070409
EST:     AGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCA                         GAGAAACAAGGCTCTGGTGAAGGAGTTGAGCACCCCACCACCAGGGGCAAA
genomic: AGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaa ... atatgagcagGAGAAACAAGGCTCTGGTGAAGGAGTTGAGCACCCCACCACCAGGGGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgagatggtgaagttttgggctttgagctgacatatatggctatatgagcagGAGAAACAAGGCTCTGGTGAAGGAGTTGAGCACCCCACCACCAGGGGCAAAGGATCTCTACTTCCTCACACAGTATTCTCAGTCCATATGGGGACAATTC
                            agctgac  putative branch site (score: 3)
                                 acatatat  TA-rich tract