Sequence
atgc intronic sequence ATGC exonic sequencegtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G20770.1 (Glycine max), 3'ss of exon 6
gtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
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---------gtttaccaactttcatatttttctagttcc---cgtcccagcttagatcacagctagaattttcttaatctttttttttcctc----ctaaaagGGATATTATCAAGCCTCAGCAAGGGAATTAATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCCGAGACATCACTTGGTGTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 6
gtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
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gtttacgc-acttcctagttt-----ttcttggttttctattttttgtccttgcttggttcataaag--ctaacaaacttttaatcatcttcct---tgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA07G01380.1 (Glycine max), 3'ss of exon 13
gtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
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------------gtttacca-actttctt--atttttctgtttcccgcccctgcttagatcacagagctagaact-ttcttaatctttttttccccctaaaagGGATATTATCAAGCCTCATCAAGGGAATTAATGCGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G20360.1 (Glycine max), 3'ss of exon 6
------------------------------------------------------------------gtagatactattttttagcatacgtgctt-tgatctctctattcttctttgctaat--------agacacacaaaaatctga---ttattatctcgttttccttttga---ctaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
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gtttaatttctttactttctaatttttatttgttagaatttatttccttataaaaatatttatacagaaaaccttaataaacagtaaatataattgttaactttccattctcggttcctaattagatcatggatctagcaacttcctagcctttgtattttattttgttttaaaattttaatagGGATATTATCAAGCCTCGGCGAGGGAATTGATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCTGCTGAGACATCACTTGGGGTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 7
gtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
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-------------------gtaatttttttcctagccctgctcaaatgtagtaatgatcgttttgttattttacctgtgctt--ttttttttttggatgaa-gGGCTATTATCAAGCTTCTGCTAGAGAAATTATACGGATCAATGGAACTACTAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGCAGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 3'ss of exon 6
gtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacaca-caaa--aatctg-attattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
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-------------------gtacatgattcgattctacttctgtttttagttgttttatgcagcaaataagtctgtattaacatccgcttcttctttgaa--aaaagGATTACTATTTAGCCTCTGCAAGGGAGCTGATTAGGATCAATGGAACAACCAAAGCTCCAGTGATGAATTATGCTGCAGAAACCTCACTTGGGGTGGTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
ttattatctcgttttc CT-rich tract
aaaaatctgattatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG