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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagctgtctaataatatttctttgctattatttacttgcaaatttgaatgaaagtgaaccagagtgaaatttgtgctaacgaattgcttgtaaatttcatggtttttcagGATGCAATTGATCTGATAAGTGGCCGCTATACTGTCAACAGAAACAGTCCTTCCCCATTCCAGCTAAACGGATTCGAATCATTCTCT

Basic information

species Vitis vinifera
transcript Vv08s0105g00480.t01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28965557|gb|CB344590.1|CB344590
EST:     GTGCTATATCAAGATATTATTTAAACAATTTCCAAGATGGGATTCGACAG                         GATGCAATTGATCTGATAAGTGGCCGCTATACTGTCAACAGAAACAGTCCT
genomic: GTGCTATATCAAGATATTATTTAAACAATTTCCAAGATGGGATTCGACAGgcaagctgtc ... ggtttttcagGATGCAATTGATCTGATAAGTGGCCGCTATACTGTCAACAGAAACAGTCCT
EST: gi|110360406|gb|EC923481.1|EC923481
EST:     GTGCTATATCAAGATATTATTTAAACAATTTCCAAGATGGGATTCGACAG                         GATGCAATTGATCTGATAAGTGGCCGCTATACTGTCAACAGAAACAGTCCT
genomic: GTGCTATATCAAGATATTATTTAAACAATTTCCAAGATGGGATTCGACAGgcaagctgtc ... ggtttttcagGATGCAATTGATCTGATAAGTGGCCGCTATACTGTCAACAGAAACAGTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaccagagtgaaatttgtgctaacgaattgcttgtaaatttcatggtttttcagGATGCAATTGATCTGATAAGTGGCCGCTATACTGTCAACAGAAACAGTCCTTCCCCATTCCAGCTAAACGGATTCGAATCATTCTCT
                  tgctaac  putative branch site (score: 1)
                                               tttttc  putative PPT
                                ttgtaaattt  TA-rich tract