Sequence
atgc intronic sequence ATGC exonic sequence...ttatataagcctaaattaggtgtttgaatggctcacttatcatcatttcatttatcttttctgtttgcttatgcattaattcttcatttttgtttttcagGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 17
ttatataagcctaaattaggtgtt--tgaatggctcacttatcatcatttcatttatcttttctgtttgcttatgcattaattcttcatttttgtttttc--agGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGAT
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--gcagaa-tatctttctggtcttgatgaatgtcattgctgttagtctttgtattgcccaatttggatttttgttggctaatg-ttctttggagttttccacagGATATGGAACCATGAGGAGGCAACACTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGAT
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 17
ttatataagcctaaattaggtgtt--tgaatggctcacttatcatcatttcatttatcttttctgtttgcttatgcattaattcttcatttttgtttttc--agGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGAT
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---tcaaaatatttttctggtcttgatgaatgttgttgctgttagtctttgtattgcccaatttggaattttgttagctaatg-ttctttggagttttccacagGATATGGAACCATGAGGAGGCTACACTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGAT
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 17
---ttatataagcctaaattaggtgtttgaatggctcacttatcatcatttcatttatcttttctgtttgcttatgcattaattcttcatttt-tgtttttcagGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGAT
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ttccctttgaaacttatcttaaac-tttgatgttctctcttgggacctctt--tttatcgagaagccttaactgcac-taagtatttcactttatttctcttagAGTGTGGAACTATGAGGAAGCAACTCTTCTCAATGGCTTTGACAATCATGATTTTCCTGACAAAGGAATTTCAAAGCTCTGCCTCATCAATGAACTTGAC
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 3'ss of exon 17
ttatataagcctaaattaggtgtttgaatggctcacttatcatcatttcatttatcttttctgtttgcttatgcattaa-ttcttcatttttgtttttcagGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGAT
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-aatcctccattcactcaaatacctcatctaaaaactgctttttgacttaattgcctctgttggacacttggactctaagtttagctgtctttcctgtcagGGTGTGGAATTACGAGGAAGCAACTCTTCTTAATGGCTTTGACAATAACGATTTTCCTGACAAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860965|gb|DT010020.1|DT010020EST: CAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAGTGAACGGATCAG GATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAA
genomic: CAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcttct ... tgtttttcagGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcatttatcttttctgtttgcttatgcattaattcttcatttttgtttttcagGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGAT
cattaat putative branch site (score: 3)
ttcttcatttttgttt CT-rich tract
attaattcttcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatataagcctaaattaggtgtttgaatggctcacttatcatcatttcatttatcttttctgtttgcttatgcattaattcttcatttttgtttttcagGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc