Sequence
atgc intronic sequence ATGC exonic sequencegtaagctcactttcaatttccatcagatgcatgactcttaacatgtcataggaagttattcttcatattatggattgtagGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAGGCTCAGCCAGAGGCTTAGCTTACCTTCATGAGCTTGCAAATCCTCCTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA16G18090.1 (Glycine max), 3'ss of exon 17
----------------------------------------------------------------------------------------------------------------------gtaagctcactttcaatttccat---cagatgcatgactcttaacatgtcataggaagttattcttcatattatggattgtagGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAGGCTCAGCCAGAGGCTTAGCTTACCTTCATGAGCTTGCAAATCCTCCTAT
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gtaagttcacagtataggaacattcaagtggtaagcttaacattcagttttggtgattgacttgttcggtaaaaaatcattgcaaagaacagaaatatcatagtacacatgtttctgtgcaacttaatttttggcatttatgtacaactgcaagagaaaagaattaataaaacaccttaaacaat-caatgtgagttgcagGGAGATCTGAGATTCATCTTGACTGGAAGAGGAGACTCCGTGTTGCTCTTGGTTCATCCAGAGGACTTGCATACTTACATGAGCTTGCCAACCCTCCCAT
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G34790.1 (Glycine max), 3'ss of exon 17
----------------gtaagctc--actttcaatttccat-cagatgcatgactcttaacatgtcataggaagttattcttcat-attatggattgtagGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAGGCTCAGCCAGAGGCTTAGCTTACCTTCATGAGCTTGCAAATCCTCCTAT
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cacattctgaaagactgtaaaactgaatttttggcatttatgtacaactacaagagaaaagaattaataaaacaccttaaacaatcaatgtgagttgcagGGAGATCTGAGATTCATCTTGACTGGAAGAGGAGACTCCGCATTGCTCTTGGTTCCGCCAGAGGACTTGCATACTTACATGAGCTTGCCAACCCTCCCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33406477|gb|CF212104.1|CF212104EST: GCTGGTTTATGAATTTATGCCCAATGGAACACTCAGGGAGAGCTTGTCAG GGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAG
genomic: GCTGGTTTATGAATTTATGCCCAATGGAACACTCAGGGAGAGCTTGTCAGgtaagctcac ... tggattgtagGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgcatgactcttaacatgtcataggaagttattcttcatattatggattgtagGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAGGCTCAGCCAGAGGCTTAGCTTACCTTCATGAGCTTGCAAATCCTCCTAT
tcttaac putative branch site (score: 2)
ttattcttcatattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagctcactttcaatttccatcagatgcatgactcttaacatgtcataggaagttattcttcatattatggattgtagGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAGGCTCAGCCAGAGGCTTAGCTTACCTTCATGAGCTTGCAAATCCTCCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT