1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtacttgcttaagcagcttatgccctttcaatattactcttcaataatgtatcttattcattatggaagctcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACT
species | Vitis vinifera |
transcript | Vv08s0007g08690.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349807848|gb|FQ402239.1|FQ402239
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349819933|gb|FQ404655.1|FQ404655
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349820408|gb|FQ406964.1|FQ406964
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349823009|gb|FQ399988.1|FQ399988
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349812248|gb|FQ411843.1|FQ411843
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349809695|gb|FQ398308.1|FQ398308
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|351053243|gb|FQ456729.1|FQ456729
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349813824|gb|FQ414058.1|FQ414058
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGATATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349815297|gb|FQ400452.1|FQ400452
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|351015572|gb|FQ426814.1|FQ426814
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349810179|gb|FQ401625.1|FQ401625
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349820692|gb|FQ408521.1|FQ408521
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349809180|gb|FQ398953.1|FQ398953
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|351027936|gb|FQ425837.1|FQ425837
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349812839|gb|FQ410481.1|FQ410481
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349824653|gb|FQ413320.1|FQ413320
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349819164|gb|FQ412058.1|FQ412058
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349807555|gb|FQ401914.1|FQ401914
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349818825|gb|FQ409359.1|FQ409359
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|351016363|gb|FQ446223.1|FQ446223
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349810657|gb|FQ402900.1|FQ402900
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349818088|gb|FQ408863.1|FQ408863
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349830660|gb|FQ416958.1|FQ416958
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: AAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|71870008|gb|DT019063.1|DT019063
genomic: AAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GTCAGACTGTAGATCCCAAAGAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|110360995|gb|EC924443.1|EC924443
genomic: GTCAGACTGTAGATCCCAAGGAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: TGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349819142|gb|FQ412036.1|FQ412036
genomic: TGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|349820087|gb|FQ404809.1|FQ404809
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCAEST: gi|71870041|gb|DT019096.1|DT019096
genomic: GAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
EST: GTCAGACTGTAGATCCCAAAGAAAAGCAGAGTGCTTTTGAAATCGGTCAG AAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
genomic: GTCAGACTGTAGATCCCAAGGAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtacttgctt ... tcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCA
tttcaatattactcttcaataatgtatcttattcattatggaagctcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACT
ctcttttgc CT-rich tract
aataatgtatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgcttaagcagcttatgccctttcaatattactcttcaataatgtatcttattcattatggaagctcttttgcagAAATACATTGAGGTTGCTGCATCTCTGGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACT
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