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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcagGGCAGTGCCAGACAGTTGTTTCAACATTTGCAGGGGCCGATGCTAGAGGAAACCCTCAAGTCTCACTTTGAGAAAATCATTTTGATTGGGCAGCAGCATC

Basic information

species Vitis vinifera
transcript Vv07s0005g06680.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA03G18730.1 (Glycine max), 3'ss of exon 9
gtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcagGGCAGTGCCAGACAGTTGTTTCAACATTTGCAGGGGCCGATGCTAGAGGAAACCCTCAAGTCTCACTTTGAGAAAATCATTTTGATTGGGCAGCAGCATC
                                                                   || ||    |         |||||  || |  ||||  ||  | ||| | ||  | | | ||        ||||| |||||||| || |||||||||| |||||||||||| |||   ||||| || || |||||||| ||||||||||| ||   |||||||||| |||| |
-------------------------------------------------------------------gtgaaaccatgtttgacatacattttgc-agctttaattgggtaaatctttcg-tatctttag-------cagGGTAGTGCCAGGCAATTGTTTCAACGTTTGCAGGGGCCAATGGAGGAGGATACACTGAAGTCTCATTTTGAGAAAATTATAAAGATTGGGCAGAAGCAGC

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA18G36660.1 (Glycine max), 3'ss of exon 18
gtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctaca-cttgctcagGGCAGTGCCAGACAGTTGTTTCAACATTTGCAGGGGCCGATGCTAGAGGAAACCCTCAAGTCTCACTTTGAGAAAATCATTTTGATTGGGCAGCAGCATC
                               ||| |  || ||  ||| ||||||| |  |||     |  |||  || | | ||   |        ||  |   ||||||| |   | |   ||| |  | |||   ||||| |||||||||||||||||||||| |||||| || || |||   ||||| || || |||||||| ||||| ||||| ||   |||||||||| |||| |
------------------------------attaaacctaatta-tttcttattttgtattat--gctttcactcataca-tattagta-------gatcctcattgtttgattggttttaaatttttgtatctttagcagGGTAGTGCCAGACAGTTGTTTCAACGTTTGCAAGGACCAATGGAGGAGGATACTCTGAAGTCTCATTTTGATAAAATTATCAAGATTGGGCAGAAGCAAC

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA16G14060.1 (Glycine max), 3'ss of exon 20
gtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcagGGCAGTGCCAGACAGTTGTTTCAACATTTGCAGGGGCCGATGCTAGAGGAAACCCTCAAGTCTCACTTTGAGAAAATCATTTTGATTGGGCAGCAGCATC-----
                                                                                                                     |   | ||||    |||   ||||| ||||| || ||||||||||||| ||||||||||||  ||   ||||| || || |||||||| ||||||||||| ||   |||||||||| |||| |     
--------------------------------------------------------------------------------------------------------------------gtaaatctttcatatctttagcagggtagTGCAAGGCAGTTGTTTCAACGTTTGCAGGGGCCATTGGAGGAGGATACACTGAAGTCTCATTTTGAGAAAATTATAAAGATTGGGCAGAAGCAGCATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcagGGCAGTGCCAGACAGTTGTTTCAACATTTGCAGGGGCCGATGCTAGAGGAAACCCTCAAGTCTCACTTTGAGAAAATCATTTTGATTGGGCAGCAGCATC
       agctaat  putative branch site (score: 3)
                                              cttgctc  putative PPT
                      tttgaatttat  TA-rich tract