Sequence
atgc intronic sequence ATGC exonic sequencegtaaccatgtggataacttttaacatatgaaaattaagatgctcagagttttatttatccttctccatgctattcacagATTAAAAATCTACCCAAGGGAGCAACTGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAAATGGTGGCTGCGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: LOC_Os03g22160.1 (Oryza sativa), 3'ss of exon 17
-----gtaaccatgtggataacttttaacatatgaaaattaagatgctcagagttttatttatccttctccatgctattcacagATTAAAAATCTACCCAAGGGAGCAACTGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAAATGGTGGCTGCGAAG
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gtgaggtgctgacttggaggacatttcttccatttgagttgagcgatt----ggtttgaatatagttttc------attggcagATTAAAAACTTGCCTAAGGGGGCCACTGTGGTTGATTATGCTTACCTGATTCACACAGAAATTGGGAACAAAATGGTAGCTGCAAAG
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GRMZM2G353147_T01 (Zea mays), 3'ss of exon 16
gtaaccatgtggataacttttaacatatgaaaattaagatgctcaga--gttttatttatccttctcca--tgctattcacagATTAAAAATCTACCCAAGGGAGCAACTGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAAATGGTGGCTGCGAAG
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------gtgaggcaatgaactcagagatattagttaaca-gcatagactattttggaggctctaaataagctgttacatgtagATTAAAAACCTGCCTAAGGGAGCCACGGTGGTTGATTATGCTTATCTGATTCATACTGAAATCGGCAACAAAATGATTGCAGCAAAG
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 17
-----------------------------------------------gtaacc-atgtggataacttttaacatatgaaaattaagatgctcagagttttattta---tccttctccatgctattcacagATTAAAAATCTACCCAAGGGAGCAACTGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAAATGGTGGCTGCGAAG
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gtaaggattggtctgtcatataccatgcctatctttccccccttcaattaattgaagaagacaattttagaaacatgtatttgaatactatctgccttttcttgataattttttgtcacattttatgcagATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAG
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA03G37450.1 (Glycine max), 3'ss of exon 19
-----------------------------------------------gtaaccatgtggataacttttaacatatgaaaattaagatgctcagagttttatttat---ccttctccatgctattcacagATTAAAAATCTACCCAAGGGAGCAACTGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAAATGGTGGCTGCGAAG
| | | ||||| | ||| | | || | || | |||| || || || || ||| |||||||| ||||| || |||| || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||
gtaaggattggtctgtcatataccatgactattttttcccccttcagttgattgaagaagacaattttagaacatgtatttcaatactatctgccttttcttgatgattttttgtcacattatatgcagATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTACGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgaaaattaagatgctcagagttttatttatccttctccatgctattcacagATTAAAAATCTACCCAAGGGAGCAACTGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAAATGGTGGCTGCGAAG
tccttctccatgct CT-rich tract
agagttttatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaccatgtggataacttttaacatatgaaaattaagatgctcagagttttatttatccttctccatgctattcacagATTAAAAATCTACCCAAGGGAGCAACTGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAAATGGTGGCTGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG