Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaataaaattgattgtcatgtttaaatttattggtaacctggtttgtttatatgattttggtttattcatgctccctgttttctcttgccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTGGTGCAGAAAAGGCACCATACACGCTTTTTCCCTTCAGATCATAGAAGTC

Basic information

species Vitis vinifera
transcript Vv06s0061g01040.t01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390755|gb|EC955682.1|EC955682
EST:     AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
EST: gi|30133651|gb|CB918990.1|CB918990
EST:     AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
EST: gi|351016543|gb|FQ423970.1|FQ423970
EST:     AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
EST: gi|110374283|gb|EC938965.1|EC938965
EST:     AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
EST: gi|33404266|gb|CF209893.1|CF209893
EST:     AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
EST: gi|351021994|gb|FQ437781.1|FQ437781
EST:     AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCATCACTGGAGGAGGGGTATCTACCA
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCA
EST: gi|349814521|gb|FQ399161.1|FQ399161
EST:     AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTG
EST: gi|351049114|gb|FQ431658.1|FQ431658
EST:     AAAGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAG                         GCCTGTGCAATCACTGGAGGAAGGGTATCTACCACCAGTTACATTTGTGGT
genomic: AAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGgtaattttta ... ccctcaccagGCCTGTGCA-TCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttatatgattttggtttattcatgctccctgttttctcttgccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTGGTGCAGAAAAGGCACCATACACGCTTTTTCCCTTCAGATCATAGAAGTC
                      ttcatgctccctgttt  CT-rich tract
     tatatgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaaaataaaattgattgtcatgtttaaatttattggtaacctggtttgtttatatgattttggtttattcatgctccctgttttctcttgccctcaccagGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTGGTGCAGAAAAGGCACCATACACGCTTTTTCCCTTCAGATCATAGAAGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
-aaaataa
- - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - -cctggtt