Sequence
atgc intronic sequence ATGC exonic sequence...atgtgaaaatttaatccttgttacactataagccttttccaaggactatttttgttagatttatatgtaatatctctctattttcttgagttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATCTCTTAGACATGGATGCAACGATATTCTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 17
-------------------------------------------------------atgtgaaaatttaatccttgttacactataagcctt--ttccaaggactatttttgttagatttatatgtaatatctctctattttct--tgagttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATCTCTTAGACATGGATGCAACGATATTCTCAAG
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gtaagtaaataaatgtgatttaacagaatgtgaatattatcgaatcatagattgcatttgaaaaaattattagtatttgagc-tgaccttaagttccagagatatattgggtaagcattattttcaccaattctaatttctctacctgcttttctacagGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATCGCTCAGACATGGATGCAATGATATCATTAAG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA11G19660.1 (Glycine max), 3'ss of exon 17
------------------------------------------atgtgaaaatttaatccttgttacactataagccttttccaaggactatttttgttagatttatatgtaatatctctctattttcttgagttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATCTCTTAGACATGGATGCAACGATATTCTCAAG
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gtaagtaataaatgtgatttatgttatcaaatcatagattgtatttgatttttttttagtatttgggctggcctcaagttccagagatatattcagtaagcattattcttaaggtgt-----ttttctctgcttttctacagACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGAAATGGGTGCAATGATATCCTTAAG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 17
atgtgaaaatttaatccttgttacactataagccttttccaaggactatttttgttaga---tttatat----gtaatatctctctattttcttgagttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATCTCTTAGACATGGATGCAACGATATTCTCAAG
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--cccaaagctaagttc-----gcacacagagcattggcagaatcatatgcttcctgaacacttttcatcaaaataatgttctcctcattgtttcttctgctttcagATTAAGGGATCGATTGGTCAAAATCGTAACAGATTACAGAACTGAGACATCTCTTAGACACGGTTGCAATGACATTCTCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30126095|gb|CB911434.1|CB911434EST: GATCCTCTCTACATTGTAAATATGGTGCCCAATGGCTTGGAGATACCTAG GCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATC
genomic: GATCCTCTCTACATTGTAAATATGGTGCCCAATGGCTTGGAGATACCTAGgttggtatca ... ttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATC
EST:
gi|30136075|gb|CB921413.1|CB921413EST: GATCCTCTCTACATTGTAAATATGGTGCCCAATGGCTTGGAGATACCTAG GCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATC
genomic: GATCCTCTCTACATTGTAAATATGGTGCCCAATGGCTTGGAGATACCTAGgttggtatca ... ttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatttttgttagatttatatgtaatatctctctattttcttgagttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATCTCTTAGACATGGATGCAACGATATTCTCAAG
ttcttttc CT-rich tract
tttgttagatttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtgaaaatttaatccttgttacactataagccttttccaaggactatttttgttagatttatatgtaatatctctctattttcttgagttcttttcagGCTAAGGGATCGCCTAGTCAAAATTATCACTGATTACAGGACTGAAACATCTCTTAGACATGGATGCAACGATATTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - gaaaatt
- - - - - - - - - - - - - - - - - - - ccaagga