Sequence
atgc intronic sequence ATGC exonic sequence...cctgtaaataggggaaaaaacacatgcactctctggtgatatacttgattgaaagtatgtttgtttgagtaataagatcactttttgatggttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 17
cctgtaaataggggaaaaaacacatgcact-ctctggtgatatacttgattgaaagtatgtttgtttgagtaataagatcactttttgatggttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCAT
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tatctatatctgtaatgtttgtattccattgttgcgtttatattttttattaatcttattctttaatcattaatgtcgttgctggtttcatgttaa-acagGTATGACAATCTTGTCATTCGGTTGGTGGGGCTAACCGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTTAGTGCTTTTCTTCAT
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 17
---cctgtaaataggggaaaaaacacatgcactc--tctggtgatatacttgattgaaagtatg-tttgtttgagtaataagatcactttttgatggttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCAT
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tgttggatattttaggcttatgacttatccatgtattatgtttgcattcctttttggcatttttctctatttaattgttgatatcatcgttcatta------acagGTATGACAATCTTGTCATTCGGTTAGTGGGGCTAGCTGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGACTCTCAGCGCTTTTCTTCAC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 17
cctgtaaataggggaaaaaacacatgcactctctggtgatatacttgattgaaagtatgtttgtttgagtaataagatcactttt--tgatggttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCAT
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tccatgtattatatttgcattccattttagcatttatctttt--ttagtatcatttttctatatttaattgttaatgtcattgctgattacaatgacaacagGTATGACAATCTTGTCATTCGGTTAGTGGGGCTTGCTGTTTTTGCCTTTGCAACTGCCTTCATACTATTAATGATGGAGACTCTCAGTGCTTTTCTTCAC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA15G04970.1 (Glycine max), 3'ss of exon 17
cctgtaaataggggaaaaaacacatgcactctctggtgatat--acttgattgaaagtatgtttgtttgagtaataagatcactttttgatggttatt--acagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCAT
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-ttatctatatctgtaa---tgtttgtattccattgttgcatttatatttttattaatcttattctttaatcattaatgtcgttcctggttacattttaaacagGTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTTAGTGCTTTTCTTCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110429789|gb|EC996295.1|EC996295EST: TCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGG GTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGC
genomic: TCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGGgtgagtttaa ... gttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGC
EST:
gi|110383349|gb|EC947717.1|EC947717EST: TCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGG GTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGC
genomic: TCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGGgtgagtttaa ... gttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattgaaagtatgtttgtttgagtaataagatcactttttgatggttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCAT
ttttgat putative branch site (score: 4)
taataagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctgtaaataggggaaaaaacacatgcactctctggtgatatacttgattgaaagtatgtttgtttgagtaataagatcactttttgatggttattacagGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - -aaatagg
- - - - - - -gaaaaaa
- - - - - - - - - - - - - cactctc
- - - - - - - - - - - - - - - - -tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - gaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaga