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...ctataacaattatgtttatcaaaaaaatatcctataacaattattcctttattgagtgcttgattggctgcctttaacaatgatttgtactttgtcacagAAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAGTTGATTGCTGAGCTGGTTCAATAATATACTCAACAGAAGAAGTTCCAAG
species | Vitis vinifera |
transcript | Vv05s0020g04100.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAA AAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAGEST: gi|351024882|gb|FQ433299.1|FQ433299
genomic: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAAgtgagtattt ... tttgtcacagAAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAG
EST: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAA AAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAGEST: gi|352780976|gb|FQ466289.1|FQ466289
genomic: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAAgtgagtattt ... tttgtcacagAAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAG
EST: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAA AAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAGEST: gi|110362374|gb|EC925903.1|EC925903
genomic: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAAgtgagtattt ... tttgtcacagAAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAG
EST: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAA AAGCAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAG
genomic: GCTTTAATGCCAGTACCATAAACTTGTTCCCAGTTGATCAGCCTATAGAAgtgagtattt ... tttgtcacagAAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAG
cctttattgagtgcttgattggctgcctttaacaatgatttgtactttgtcacagAAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAGTTGATTGCTGAGCTGGTTCAATAATATACTCAACAGAAGAAGTTCCAAG
ctttaac putative branch site (score: 3)
ctttgtc putative PPT
tttaacaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctataacaattatgtttatcaaaaaaatatcctataacaattattcctttattgagtgcttgattggctgcctttaacaatgatttgtactttgtcacagAAACAGAATGTTGACTCTGAAGAGGAATTGAATAAGCCTCAAAATGGTGAGTTGATTGCTGAGCTGGTTCAATAATATACTCAACAGAAGAAGTTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- ataacaa
- - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaatga