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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaaatttccttttttctattgcttttcattcattattggacttcagatgtgctcctgcctcttgtagtgactgaatgttgatgatatttgcagGATGGTGCACTACAGTTGACTAAGTCCTTGTTCAGTGGGGCCCAAGAGCTTGTGAAACTTGACTTATCTTATTGTGGACTAACATCTGAGTACATTACCA

Basic information

species Vitis vinifera
transcript Vv04s0044g00860.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g00860.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G15560.1 (Glycine max), 3'ss of exon 17
gtgagtgaaatttccttttttctattgcttttcattcattattggac-ttcagatgtgctcctgcctcttgtagtgactgaatgttgatgatatt-tgcagGATGGTGCACTACAGTTGACTAAGTCCTTGTTCAGTGGGGCCCAAGAGCTTGTGAAACTTGACTTATCTTATTGTGGACTAACATCTGAGTACATTACCA
|||||| |||   ||| | | | | || | ||||   ||||| |    |||     ||||    | || ||   |  ||||     | | ||||| ||||||| || ||| |  | ||  |  | || ||| ||   ||| |  |||||||||||||||||||| |||| |||||||| ||||||| | | |   ||   |
gtgagtaaaa---cctatctccaactg-tgttcacgtattatggtttattctagcatgctttgacttcctggtctt-ctgatgagaggtaatattctgcagGAAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA

upper sequence: Vv04s0044g00860.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA05G32290.1 (Glycine max), 3'ss of exon 17
gtgagtgaaatttccttttttctattgcttttcattcattattggac--ttcagatgtgctcctgcctcttgtagtgactgaatgt--tgatgata----------tttgcagGATGGTGCACTACAGTTGACTAAGTCCTTGTTCAGTGGGGCCCAAGAGCTTGTGAAACTTGACTTATCTTATTGTGGACTAACATCTGAGTACATTACCA
|||||| |||   ||| | | | | ||| | |    ||||| || |   ||  | | |  ||  || |  | |    |||  || |  | ||||||          | ||||||| || |||  | | ||  |  | || ||| |||  ||  |  ||||| |||||||||||||| |||| |||||||| ||||||| | | |   ||   |
gtgagtaaaa---cctatctccaactgcatgtt-cacattactgtatcattatggtttattctagcatgctttgcccacttgatcttctaatgatagaggcattattctgcagGAAGGAGCAACAAAATTAGCAGAATCATTGCTCAAAGGAACTGAAGAGTTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttcagatgtgctcctgcctcttgtagtgactgaatgttgatgatatttgcagGATGGTGCACTACAGTTGACTAAGTCCTTGTTCAGTGGGGCCCAAGAGCTTGTGAAACTTGACTTATCTTATTGTGGACTAACATCTGAGTACATTACCA
                                     tgttgat  putative branch site (score: 4)
                                          atgatattt  TA-rich tract