Sequence
atgc intronic sequence ATGC exonic sequence...tcaagtttgatttgatgttcttgcaagatgcatcataaatgttctgcatgcacaaatttattctgcggctgcatttatttatttgctctttttcttctagGTGGACCATTGTTTTGATATATTTGTTTCAAAATTATGTGACAATATTTTCACATACTACAAAAGTTGGGCTGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00740.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA19G43970.1 (Glycine max), 3'ss of exon 18
-tcaagt-ttgatttgatgttcttgcaagatgc-atcataaatgttctgcatgcacaaatttattctgcggctgcatttatttatttgctctttttcttctagGTGGACCATTGTTTTGATATATTTGTTTCAAAATTATGTGACAATATTTTCACATACTACAAAAGTTGGGCTGCAAG
|| || | | || || | || | | | | || || | || | | | | ||| | | | |||| | ||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||| ||| |
ttctggtgctagtacaataagatttttgcttctgattaccagtttcctat---catatgctttctgcattcattgactcttttctgtttaccttttttcacagGTGGATCATTGTTTTGATATATTTGTTACAAAATTATGTGAAACCATTTTCACATATTACAAAAGTTGGGCGGCATG
upper sequence: Vv04s0043g00740.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA03G41350.1 (Glycine max), 3'ss of exon 19
tcaagtttgatttgatgttcttgcaagatgc-atcataaatgttctg-catgcacaaatttattctgcggctgcatttatttatttgctctttttcttctagGTGGACCATTGTTTTGATATATTTGTTTCAAAATTATGTGACAATATTTTCACATACTACAAAAGTTGGGCTGCAAG
|| | | || | || | | | | || ||| | | | | | | || | | ||| | |||||| | ||||||| ||||||||||||||||||||| ||||||| ||||| | ||||||||||| |||||||||||||| |||||
-tggtgttagtacaacaagatttttgcttctgattaccagtttcctatcatatgctttctccattcattgatactgttttctgtttac-ctttttttcacagGTGGATCATTGTTTTGATATATTTGTTACAAAATTGTGTGAAACCATTTTCACATATTACAAAAGTTGGGCGGCAAG
upper sequence: Vv04s0043g00740.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT5G18410.2 (Arabidopsis thaliana), 3'ss of exon 19
----tcaagtttgatttgatgttcttgcaagatgca---tcataaatgttct-gcatgcacaaatttattctgcg--gctgcatttatttatttgct--ctttttcttctagGTGGACCATTGTTTTGATATATTTGTTTCAAAATTATGTGACAATATTTTCACATACTACAAAAGTTGGGCTGCAAG
| | ||| | || || ||| || | | ||| | |||| | ||| | | || || | || || || | | || ||| || | |||||||||||| ||||||||||||||||||||| | | || ||| |||||||| ||||| |||||| | |||||
gtaattagatttcaattc-tgatctcaacaggtataatcctataggtcttcttgaatgaaaaggttccttgaacaatactatcgtttcttgtctcctgtcttctttctgtagGTGGACCATGGTTTTGATATATTTGTTTCAAGGCTCTCGGAGTCTATATTCACATATTACAAGAGTTGGTCAGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatgcacaaatttattctgcggctgcatttatttatttgctctttttcttctagGTGGACCATTGTTTTGATATATTTGTTTCAAAATTATGTGACAATATTTTCACATACTACAAAAGTTGGGCTGCAAG
catttatttatttgct CT-rich tract
atttatttatttgctc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaagtttgatttgatgttcttgcaagatgcatcataaatgttctgcatgcacaaatttattctgcggctgcatttatttatttgctctttttcttctagGTGGACCATTGTTTTGATATATTTGTTTCAAAATTATGTGACAATATTTTCACATACTACAAAAGTTGGGCTGCAAG
- - - - - - - - - -cttgcaa
- - - - - - - - - - - - - gatgcat
- - - - - - - - - - - - - - - - - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggctgc