1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgcgtatttccttgtattattaacctctgaaatatgaaggaactctcttatttgtgctaaattactcacttgtttgttatgtttgcctctcacagTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTTAGCGACTCCTTGGTGGCCAAAAGCCTGTACCTTCAAAATGGGAGCTGT
species | Vitis vinifera |
transcript | Vv04s0008g02780.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGTTTGAATAG TACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTEST: gi|51050310|gb|CO818484.1|CO818484
genomic: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtat ... cctctcacagTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGT
EST: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAG TACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTEST: gi|110394125|gb|EC958654.1|EC958654
genomic: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtat ... cctctcacagTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGT
EST: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAG TACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTEST: gi|110413902|gb|EC979718.1|EC979718
genomic: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtat ... cctctcacagTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGT
EST: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGTTTGAATAG TACCCGGAAGCTCAGAGGCGCACTCAACTTCGATGATGTCGAGGGTTTAGT
genomic: TATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtat ... cctctcacagTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGT
aactctcttatttgtgctaaattactcacttgtttgttatgtttgcctctcacagTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTTAGCGACTCCTTGGTGGCCAAAAGCCTGTACCTTCAAAATGGGAGCTGT
tactcac putative branch site (score: 1)
tttgcctctc putative PPT
taaattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgtatttccttgtattattaacctctgaaatatgaaggaactctcttatttgtgctaaattactcacttgtttgttatgtttgcctctcacagTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTTAGCGACTCCTTGGTGGCCAAAAGCCTGTACCTTCAAAATGGGAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT