Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgatttaaactacatcttgttaatttcctcacttacattcatgtatggatggaatatccacgagcatgcacacacgattgtattctttcctcaatttggttgatatattagtaacctttttattgcccttcattttacaattactgtcatcatcatcatagctttcttttctcctcttcagGTGTGGAATCTCGACTTGCAACTCTCACAGTGGATACTGATGATGTGCGCAAGTTGTCAGTGTACAGCAATCGTCCTGACCTACCCGTAAGTTTCACGAG

Basic information

species Vitis vinifera
transcript Vv04s0008g02740.t01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29785379|gb|CB342306.2|CB342306
EST:     TATTCGCCCCCTCCAGATTGAAGGCGAGCTATATGTTGGAATTCCTCCAG                         GTGTGGAATCTCGACTTGCAACTCTCACAGTGGATACTGATGATGTGCGCA
genomic: TATTCGCCCCCTCCAGATTGAAGGCGAGCTATATGTTGGAATTCCTCCAGgcacgattta ... tcctcttcagGTGTGGAATCTCGACTTGCAACTCTCACAGTGGATACTGATGATGTGCGCA
EST: gi|110724413|gb|EE100217.1|EE100217
EST:     TATTCGCCCCCTCCATATTGAAGGCAAGCTATATGTTGGAATTCCTCCAG                         GTGTGGAATCTCGAACT-GCAACTCTCACAGTGGAAAACTGA-GATGTGCG
genomic: TATTCGCCCCCTCCAGATTGAAGGCGAGCTATATGTTGGAATTCCTCCAGgcacgattta ... tcctcttcagGTGTGGAATCTCGA-CTTGCAACTCTCACAGTGGATA-CTGATGATGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcattttacaattactgtcatcatcatcatagctttcttttctcctcttcagGTGTGGAATCTCGACTTGCAACTCTCACAGTGGATACTGATGATGTGCGCAAGTTGTCAGTGTACAGCAATCGTCCTGACCTACCCGTAAGTTTCACGAG
                          tcatcatagctttctt  CT-rich tract
     attttacaattact  TA-rich tract