1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...atttaaaaaattgttaccttatcagttctgtctctttccatatgcacaattaaaaagtcaaaggatataatttttcctcatttttgctgcattctcatagGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACTGATAGAAAGATCCAGAAAAAG
species | Vitis vinifera |
transcript | Vv01s0026g00340.t01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAG GTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGEST: gi|32249386|gb|CD715205.1|CD715205
genomic: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAGgtagttttgc ... attctcatagGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCG
EST: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAG GTAAGGGATCAGATTCATCAAGCTEST: gi|22011637|gb|BQ796671.1|BQ796671
genomic: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAGgtagttttgc ... attctcatagGTAAGGGATCAGATTCATCAAGCT
EST: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAG GTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACTEST: gi|110360907|gb|EC924350.1|EC924350
genomic: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAGgtagttttgc ... attctcatagGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACT
EST: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAG GTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACTEST: gi|22011184|gb|BQ796218.1|BQ796218
genomic: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAGgtagttttgc ... attctcatagGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACT
EST: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAG GTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACT
genomic: AGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAGgtagttttgc ... attctcatagGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACT
acaattaaaaagtcaaaggatataatttttcctcatttttgctgcattctcatagGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACTGATAGAAAGATCCAGAAAAAG
cattctc CT-rich tract
atataatttttcctca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaaaaaattgttaccttatcagttctgtctctttccatatgcacaattaaaaagtcaaaggatataatttttcctcatttttgctgcattctcatagGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACTGATAGAAAGATCCAGAAAAAG
- - aaaaaat
- - - - - -tgttacc
- - - - - - - - - - - - -ttctgtc
- - - - - - - - - - - - - - - - - - -ccatatg
- - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagga