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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcttaaaattcagttttttcaattgggtcttgtccaagtgcacagaaatgcttaattggtgctcggccatgtggtattcatgcatggacacatctccgaagcacatgtacctacttggttgtaacagggaatgaccctgaaattgactactgctttgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAGAACTCAAATGGGAACTTGATGACAAATACACCCACCATAGTTTTCCTGT

Basic information

species Vitis vinifera
transcript Vv00s0229g00110.t01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265063|gb|CA816126.1|CA816126
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|30127273|gb|CB912612.1|CB912612
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110363810|gb|EC927429.1|EC927429
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110390444|gb|EC955353.1|EC955353
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|351024602|gb|FQ433017.1|FQ433017
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGTTTGAGGGGAGCTTCACA
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACA
EST: gi|28966765|gb|CB345798.1|CB345798
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGGGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|30320679|gb|CD003941.1|CD003941
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|27755268|gb|CB036023.1|CB036023
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110418677|gb|EC984841.1|EC984841
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110367991|gb|EC931951.1|EC931951
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110382078|gb|EC938426.1|EC938426
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|351048342|gb|FQ449434.1|FQ449434
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|22015302|gb|BQ800336.1|BQ800336
EST:     GAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCCTGAA
genomic: GAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAAT-CTGAA
EST: gi|29785455|gb|CB342449.2|CB342449
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|26267157|gb|CA818220.1|CA818220
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|30252859|gb|CB970410.1|CB970410
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|351034909|gb|FQ458266.1|FQ458266
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAA-TAACCATGGTTGAGGGGAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAG
EST: gi|110364261|gb|EC923717.1|EC923717
EST:     TGTTTCACATGACAAAGGACACAAAACCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCCCAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacttggttgtaacagggaatgaccctgaaattgactactgctttgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAGAACTCAAATGGGAACTTGATGACAAATACACCCACCATAGTTTTCCTGT
                                          ctttgttt  CT-rich tract
                                           tttgtttaa  TA-rich tract