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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccccatattttgaaaaattcgtttggtttgatttgttcttgttttgatccgtatttgaacccaatttctgtttgcaatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTACAAACTTTTCGAAGCCCCCTCGATCCAGAAGAATCCAGTGGTTTCGATG

Basic information

species Vitis vinifera
transcript Vv00s0181g00120.t01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579782|gb|CB002477.1|CB002477
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: gi|110362409|gb|EC925940.1|EC925940
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: gi|110731301|gb|EE105595.1|EE105595
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: gi|46910274|gb|CN545649.1|CN545649
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: gi|30298719|gb|CB975513.1|CB975513
EST:     ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: gi|27578479|gb|CB001174.1|CB001174
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: gi|110381073|gb|EC946387.1|EC946387
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTATTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgttcttgttttgatccgtatttgaacccaatttctgtttgcaatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTACAAACTTTTCGAAGCCCCCTCGATCCAGAAGAATCCAGTGGTTTCGATG
            ttttgat  putative branch site (score: 4)
                      tatttgaa  TA-rich tract