1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...agctggactttttccttttgaagcttactctgtgtgttatttgggcttgtcatgtttgttttatgtgctaatacatggtatttaaatctgtcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG
species | Vitis vinifera |
transcript | Vv19s0085g00880.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|351040417|gb|FQ434550.1|FQ434550
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGGGGAEST: gi|30302041|gb|CB978835.1|CB978835
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|32245740|gb|CD711559.1|CD711559
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: ATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|30128391|gb|CB913730.1|CB913730
genomic: ATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|29785203|gb|CB341997.2|CB341997
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTACACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|352765000|gb|FQ473648.1|FQ473648
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|77586300|gb|DV222253.1|DV222253
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|351018416|gb|FQ439228.1|FQ439228
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|349820783|gb|FQ404157.1|FQ404157
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|77580016|gb|DV218890.1|DV218890
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|33407655|gb|CF213282.1|CF213282
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110373835|gb|EC938222.1|EC938222
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: GGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110395231|gb|EC960880.1|EC960880
genomic: GGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|34543124|gb|CF511356.1|CF511356
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACGTGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTNTAAAACCGAGGAEST: gi|110363491|gb|EC927084.1|EC927084
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110378892|gb|EC944048.1|EC944048
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110393201|gb|EC958271.1|EC958271
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110714572|gb|EE091629.1|EE091629
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTCGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110418290|gb|EC984428.1|EC984428
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110728458|gb|EE104042.1|EE104042
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|34543207|gb|CF511439.1|CF511439
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACGTGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|29785173|gb|CB341929.2|CB341929
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTG-ATCCTGTTACACCCCTCTTGCGCTTTAAAEST: gi|161716149|gb|FC069492.1|FC069492
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGA-CCTGTTGCACCCCTCTTGCGCTTTAAA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|33407050|gb|CF212677.1|CF212677
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCAAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|352763958|gb|FQ465408.1|FQ465408
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: CGGTAATTGGTGACATCAAG-ATGGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|30134739|gb|CB920077.1|CB920077
genomic: CGGTAATTGGTGACATCAAGAAT-GACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|351029837|gb|FQ427677.1|FQ427677
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110693458|gb|EE069709.1|EE069709
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110375935|gb|EC940965.1|EC940965
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: GGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|29781739|gb|CB346445.2|CB346445
genomic: GGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|27586231|gb|CB008926.1|CB008926
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|30251721|gb|CB969454.1|CB969454
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|37190549|gb|CF609898.1|CF609898
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|351040173|gb|FQ425259.1|FQ425259
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|110688619|gb|EE067379.1|EE067379
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAEST: gi|351033667|gb|FQ462197.1|FQ462197
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGA
EST: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAG GAATGAAGTGTT
genomic: TATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGgtaaactcta ... tcttcaccagGAATGAAGTGTT
cttgtcatgtttgttttatgtgctaatacatggtatttaaatctgtcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG
tgctaat putative branch site (score: 2)
tctgtcttc putative PPT
tatttaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctggactttttccttttgaagcttactctgtgtgttatttgggcttgtcatgtttgttttatgtgctaatacatggtatttaaatctgtcttcaccagGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - tgaagct
- - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - gggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgg