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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctcaatccacatgttttatgttgtcttgcatctgtatacaacgacatgaaattgtaattggacttagttcatgaattacagAAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAA

Basic information

species Vitis vinifera
transcript Vv18s0041g00100.t01
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34549600|gb|CF517832.1|CF517832
EST:     GTTTGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAG                         AAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG
genomic: GTTTGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAGgtaatctcaa ... tgaattacagAAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG
EST: gi|22014156|gb|BQ799190.1|BQ799190
EST:     GTTTGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAG                         AAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG
genomic: GTTTGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAGgtaatctcaa ... tgaattacagAAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG
EST: gi|30127173|gb|CB912512.1|CB912512
EST:     GTGGGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAG                         AAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG
genomic: GTTTGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAGgtaatctcaa ... tgaattacagAAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG
EST: gi|27585306|gb|CB008001.1|CB008001
EST:     GTTTGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAG                         AAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG
genomic: GTTTGGAAGATGTGAAGAAGGTTGCTTTACACTATGGATTTCAAATGGAGgtaatctcaa ... tgaattacagAAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatctgtatacaacgacatgaaattgtaattggacttagttcatgaattacagAAAGAAAGGACCATTGAGACGACCTACACAACGAATCCTCGATCCATGATGCAA
                   atgaaattgtaatt  TA-rich tract