1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...catctgcaatggactattgactaaagcagcaggttccactacattcccatttttcagcaacatttagttccaaatttgaaatttctcgtcttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAAGGTTTGCCTGTTGCTCTTGTGCAGTATGAAGGAGAACAACATGGTTTTC
species | Vitis vinifera |
transcript | Vv18s0001g11150.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAG GTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAAEST: gi|110386770|gb|EC951392.1|EC951392
genomic: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAGgtatgtacaa ... ttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAA
EST: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAG GTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAAEST: gi|30124740|gb|CB910079.1|CB910079
genomic: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAGgtatgtacaa ... ttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAA
EST: TGATAAATTTTCTTGCCCCATTATTTTATTCNCA-GGATTGGAAGACAAG GTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAACAAEST: gi|352768447|gb|FQ469623.1|FQ469623
genomic: TGATAAATTTTCTTGCCCCATTATTTTATTC-CAAGGATTGGAAGACAAGgtatgtacaa ... ttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAA
EST: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAG GTGGTACCCCCAGAGCAAGCTTGTAAAATTTACCTGGCACTGAAGAAAAAAEST: gi|33406811|gb|CF212438.1|CF212438
genomic: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAGgtatgtacaa ... ttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAA
EST: TTGATAAATTTTCTTGCCCCATTATTTTATTCGATCNATTGGAAGACAAG GTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAEST: gi|110359883|gb|EC922159.1|EC922159
genomic: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAGgtatgtacaa ... ttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGA
EST: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAG GTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAAEST: gi|71884328|gb|DT033383.1|DT033383
genomic: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAGgtatgtacaa ... ttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAA
EST: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAG GTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAA
genomic: TTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAGgtatgtacaa ... ttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAA
cccatttttcagcaacatttagttccaaatttgaaatttctcgtcttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAAGGTTTGCCTGTTGCTCTTGTGCAGTATGAAGGAGAACAACATGGTTTTC
tttctcgtcttttccg CT-rich tract
aaatttgaaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctgcaatggactattgactaaagcagcaggttccactacattcccatttttcagcaacatttagttccaaatttgaaatttctcgtcttttccgcagGTGGTACCCCCAGAGCAAGCTCGTAAAATCTACCTGGCACTGAAGAAAAAAGGTTTGCCTGTTGCTCTTGTGCAGTATGAAGGAGAACAACATGGTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
catctgc
- - - - - - - - - - - - agcagca
- - - - - - - - - - - - - - - - - tccacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaatt