1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgcaatgacataaaaataatttattgattttaaatttattttttatttttcttcactttttctttcctttatatataaaaataatttgtcacatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTCTTCAAGTTCCAATAGTGCAGAAATATTTTCTCCTGATTCTGGGGACAC
species | Vitis vinifera |
transcript | Vv17s0000g01640.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTEST: gi|351015920|gb|FQ431875.1|FQ431875
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTEST: gi|351044679|gb|FQ443210.1|FQ443210
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCAACGATTAACTATCTGAGGGAA-AAACGAAEST: gi|351044040|gb|FQ431471.1|FQ431471
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTA-CTATCTGAGG-AAGAAACGAA
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTEST: gi|352790717|gb|FQ478265.1|FQ478265
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCCACGATTACTATCTGAGGAAGAAACGAATTEST: gi|351030219|gb|FQ432157.1|FQ432157
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTEST: gi|351013519|gb|FQ425550.1|FQ425550
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTEST: gi|37187520|gb|CF606873.1|CF606873
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
EST: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAG GTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
genomic: GGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGgtgagttttg ... acatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATT
tttttcttcactttttctttcctttatatataaaaataatttgtcacatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTCTTCAAGTTCCAATAGTGCAGAAATATTTTCTCCTGATTCTGGGGACAC
cattttt CT-rich tract
tttcctttatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaatgacataaaaataatttattgattttaaatttattttttatttttcttcactttttctttcctttatatataaaaataatttgtcacatttttagGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTCTTCAAGTTCCAATAGTGCAGAAATATTTTCTCCTGATTCTGGGGACAC
-gcaatga
- - - - - - aaaataa