1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gctgaagatccttattgttatgcatgactatgactgccatgttcaatcgtcatacattaaactcgaagatctaatgccctttgatgtatgttcttgacagTTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCTGGGAAGCATCTCGCAAGGAAAACGACCAGCCTTCTTACGCCTCAATTGT
species | Vitis vinifera |
transcript | Vv17s0000g00390.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTGGATCAGTCGGAGTGGGCAAACACCAACTTCACATGACGCTGTTGATG TTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCTEST: gi|351013536|gb|FQ425567.1|FQ425567
genomic: TTGGATCAGTCGGAGTGGGCAAACACCAACTTCACATGACGCTGTTGATGgtaactttct ... ttcttgacagTTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCT
EST: TTGGATCAGTCGGAGTGGGCAAACACCAACTTCACATGACGCTGTTGATG TTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCTEST: gi|352774105|gb|FQ474628.1|FQ474628
genomic: TTGGATCAGTCGGAGTGGGCAAACACCAACTTCACATGACGCTGTTGATGgtaactttct ... ttcttgacagTTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCT
EST: TTGGATCAGTTGGAGTGGGCAAACACCAACTTCACATGACGCTGTTGATG TTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTTT
genomic: TTGGATCAGTCGGAGTGGGCAAACACCAACTTCACATGACGCTGTTGATGgtaactttct ... ttcttgacagTTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCT
atcgtcatacattaaactcgaagatctaatgccctttgatgtatgttcttgacagTTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCTGGGAAGCATCTCGCAAGGAAAACGACCAGCCTTCTTACGCCTCAATTGT
tgttctt CT-rich tract
atacattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgaagatccttattgttatgcatgactatgactgccatgttcaatcgtcatacattaaactcgaagatctaatgccctttgatgtatgttcttgacagTTGAGCGAGGCCTGAGGGAGCTGAGGAAACTAGGGATAGAGCAACAACTCTGGGAAGCATCTCGCAAGGAAAACGACCAGCCTTCTTACGCCTCAATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - -gcatgac
- - - - - - - - - - - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - catacat