Sequence
atgc intronic sequence ATGC exonic sequence...agaagcgaattgaacttttgatgttgaatatggactctttaacatatatcttttggatttgttcactccatctttactccttcctaccctttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA06G13280.1 (Glycine max), 3'ss of exon 16
--agaagcgaattgaacttttgatgttgaatat-ggactctttaacatatatcttttggattt--gttcactccatctttactccttcctaccctttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCT
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gtatgatcatatcttgcttcaatccttttacattggatacttttggttggattttgttgtcttaggtgttcatcttctttaatccctttt--tgttactatgcagAATGCCAACCCTGCTGCTCGAGTTAGTGTGAAGTTGGTATCTGAAGCTGGAGTTGGTGTAGTTGCCAGTGGAGTTGTTAAAGGCCATGCTGATCATGTCT
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA04G41540.1 (Glycine max), 3'ss of exon 16
--agaagcgaattgaacttttgatgttgaatat-ggactctttaacatatatcttttggatttgttcactccatctttactccttcctaccctttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCT
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gtatgttcatatcttgcttcaatccttttacattggatactttttgttggattttgttgccttaggtgttcatcctctttaatccctttttgtttatatgcagAATGCCAACCCTGCTGCTCGAGTTAGTGTGAAGTTGGTATCTGAAGCTGGAGTTGGTGTAGTTGCCAGTGGAGTTGTTAAAGGCCATGCTGATCATGTCT
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA19G16450.1 (Glycine max), 3'ss of exon 12
--------agaagcgaattgaact-tttgatgttgaatatggactctttaacatatatcttttggatttgttcactccatctttactcc--ttcctaccctttt-----tttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCT
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gtattttcatttgtgtattctactcttttgcaatcaatgtttctaattgaatattactcaattatgttattcccatttaatactgttgagatactgaaggttttgttaatttgtagAATGCCAACCCGGCTGCTCGGATTAGTGTGAAGTTGGTATCGGAAGCTGGAGTGGGGATAATTGCTAGTGGAGTTGTTAAAGGCCATGCTGACCATGTAT
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 16
-----agaagcgaattgaacttttgatgttgaatatggactctttaacatatatcttttggatttgttcactccatctttactccttcctaccctttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCT
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gtattttcatctgtgtattctattcttttacaatcaatgcttctaattgaatattactcaaatatgtt-attcc-tgtttaatacattttg---ttaatttgtagAATGCCAACCCAGCTGCTCGGATTAGTGTGAAGTTGGTATCGGAAGCTGGAGTGGGGATAATTGCTAGTGGAGTTGTTAAAGGCCATGCCGACCATGTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690765|gb|EC957455.1|EC957455EST: ATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAG AATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTAGTATCTGAAGCTGGT
genomic: ATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagat ... ttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatcttttggatttgttcactccatctttactccttcctaccctttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCT
tttgttcactccatct CT-rich tract
tttttttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaagcgaattgaacttttgatgttgaatatggactctttaacatatatcttttggatttgttcactccatctttactccttcctaccctttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - -aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - -cttttgg