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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtcttcctaagattttttagcataactttgatttatatcagataaattcaacatataatctggtgataattttcccatttggaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGCCGGGCTTCGAATCTTAAACTTATTGAG

Basic information

species Vitis vinifera
transcript Vv16s0022g02060.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 10
gtaagttgtcttcctaagattttttagcataactttgatttatatcagataaattcaacatataatctggtgataattttcccatttggaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGCCGGGCTTCGAATCTTAAACTTATTGAG
|||||||       | |   | ||       |  ||||||||      ||| ||||    | | || |  |||   | |       ||  ||  |||||||||  | |  ||||||||||| ||||||||||||||||| ||| | || || ||||| |||||| | ||| |||||
gtaagttaatgcagtcaacgtgttggatgatatattgatttact----atacattc----ttttatatattgagtgtctgtttccatgacaac-ttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 17
gtaagttgtcttcctaagattttttagcataactttgatttatatcagataaattca-acatataatctggtgataattttcccatttggaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGCCGGGCTTCGAATCTTAAACTTATTGAG
|||||||       | |  || ||   |   |  |||||||     | |||  || | | ||  |||||          || ||||   || |  |||||||||  | |  ||||||||||| ||||||||||||||||| ||| | || || ||||| |||||| | ||| |||||
gtaagttaatgcagtcaacttgttggacgatatattgatttcctatacatacttttatatattgaatctc-------cgtttccat---gacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426017|gb|EC992414.1|EC992414
EST:     TTGCAGTGGTCACTAAAGCCTTTGGATATAGCGTTAGGACATCTTTCCTT                         GTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGC
genomic: TTGCAGTGGTCACTAAAGCCTTTGGATATAGCGTTAGGACATCTTTCCTTgtaagttgtc ... gaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGC
EST: gi|352763890|gb|FQ465340.1|FQ465340
EST:     TTGCAGTGGTCACTAAAGCCTTTGGATATAGCGTTAGGACATCTTTCCTT                         GTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGC
genomic: TTGCAGTGGTCACTAAAGCCTTTGGATATAGCGTTAGGACATCTTTCCTTgtaagttgtc ... gaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagataaattcaacatataatctggtgataattttcccatttggaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGCCGGGCTTCGAATCTTAAACTTATTGAG
     ataaattcaacatata  TA-rich tract